Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1793 210 3e-49 seq1923 91.5 2e-13 >seq1793 Length=11804 Score = 210 bits (232), Expect = 3e-49 Identities = 623/948 (66%), Gaps = 26/948 (3%) Strand=Plus/Minus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || || || || || ||||| ||||| | | | | |||| || ||||| ||||| Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 |||||| || |||| ||||||| || | || || ||||| ||||| || |||||| Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || ||||| || | || || ||| |||||| ||| | ||| | | ||||| | Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGA-G 7478 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAA 63133 || | | || | ||| | |||| | || ||||| | |||| Sbjct 7477 CTTCTGGGCGCGG--ATGGTCTTGCGAC-CCTTGCCCTCACGCTCGTACTTTTCGTACAG 7421 Query 63134 TCGTTCGAACTCGTCTCCCCAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATC 63191 || ||||| ||| ||| | || | ||| || || || |||| |||||||| Sbjct 7420 AGCCTCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATG 7363 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 | | ||| || |||| | || || || ||||| ||||||||||| ||||| || || Sbjct 7362 AGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCG 7303 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | || || || | | | | ||||| || || ||||| || ||||||||| Sbjct 7302 AGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAAC 7243 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | ||||| ||||| || |||| ||| ||||| | | || || || ||||| Sbjct 7242 TCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTG 7183 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| |||| ||||| || ||||| || | |||| | ||| ||||| | || Sbjct 7182 CCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCA 7123 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 63489 || || |||| ||||| || | || || ||| ||||||| || | ||| Sbjct 7122 TTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTG 7063 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 || || || || || |||||||| ||||| | ||||| || | ||||||||||| Sbjct 7062 --AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGA 7005 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | ||||| ||||| ||||| |||||| | || || ||| |||| ||| | Sbjct 7004 TGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGG 6945 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 ||| || ||||| || | ||| ||||| ||||| || || | || || | || | Sbjct 6944 GAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGT 6885 Query 63670 TGTACGTCTCAAT----AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACG 63724 ||||||| ||||| ||| | | | | || || |||| || || |||||||| Sbjct 6884 TGTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACACG 6830 Query 63725 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63784 ||| | ||| ||||| |||| || || |||||| ||| | |||| | ||| ||| Sbjct 6829 CATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGATCG 6770 Query 63785 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 |||| ||| || || ||||| || | ||| ||||||| ||||| Sbjct 6769 CTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 >seq1923 Length=107003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||||||||||||| | || |||||||| || || || || Sbjct 7755 CAGGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGG 7814 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | ||| ||||| || |||||||| ||||| || || | || |||||| Sbjct 7815 CCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAG 7874 Query 33424 ATTCCTTCTACTGCAGCAAAGGC 33446 || || || || || |||||||| Sbjct 7875 ATGCCCTCAACAGCGGCAAAGGC 7897 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/286 (67%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 33574 TAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAA 33631 || || ||||||| || || ||| | || || || ||||| || || ||||||| Sbjct 8104 TATGTGTCGATCAGCAACGAGTATG--TCTCAGAGTGGATGTTCTCCATCATGATCTGAA 8161 Query 33632 ATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAAT 33691 | |||||||| |||| || || | || ||| || || | ||||| || ||| | Sbjct 8162 ACCCGTAGAAGCATCGGGCTTCTGGAACCTGAACCTCGCCGCTGAATCGCTCTACCAGGT 8221 Query 33692 TTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 33751 | || || || || |||||| ||| ||||| || |||| | || || || |||| Sbjct 8222 TCTCGTTGACGATGCCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGAGAGATGAAGTATT 8281 Query 33752 TTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 33808 | ||||| | | | ||||||||||| | | ||| || || | ||| | |||| Sbjct 8282 TCTCGTCATCATTCAATCGATTATTCCAATCGTGCAGATCCTTTGAGAGATCAATCTCTT 8341 Query 33809 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | ||||||| || || ||||| || || || ||||| | ||| || Sbjct 8342 CGGCTGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTGCCAAAT 8387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931361567440