Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1893 118 9e-22 seq1479 89.7 4e-13 >seq1893 Length=9943 Score = 118 bits (130), Expect = 9e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | |||||| |||| || ||| || |||||| || || | ||||| | Sbjct 903 ACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTATTGACAACGTCAAGTCA 962 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| || || ||||| || ||||| || || || | ||||||| || |||||| Sbjct 963 AAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAGCAACGTCTGATTTTCGCTGGCAAG 1022 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||||| | | | || ||| || ||||||||||| ||||| ||| ||||| Sbjct 1023 CAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAAAAGGAATCAACACTTCAT 1082 Query 24195 TTAGTGTT 24202 || ||||| Sbjct 1083 TTGGTGTT 1090 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || || || | || ||| | || |||||| | | Sbjct 576 ATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 635 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| ||||| || ||||| ||||| || || Sbjct 636 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 695 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||||| || ||||||||||||||||||| | | | | ||| || ||| Sbjct 696 CAGCGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAAC 755 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || |||||||| Sbjct 756 ATCCAGAAGGAATCTAC 772 >seq1479 Length=130260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || || ||| | || ||| |||| |||||| || ||||||||||| | ||||| Sbjct 49610 ACGGGTAAAACCATCACCCTCGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCT 49551 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || ||||| || || || ||||| || || ||| || |||||| || ||||||| Sbjct 49550 AAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATTGATTTTCGCCGGCAAG 49491 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 |||||||| |||| | ||| | | ||| || || || ||||| Sbjct 49490 CAACTCGAGGATGGCCGAACCCTGTCCGACTACAATATCCAAAA 49447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925342155270