Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1835 140 2e-28
seq1893 96.9 2e-15
seq1745 96.9 2e-15
>seq1835
Length=10949
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3124 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3183
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 3184 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3218
>seq1893
Length=9943
Score = 96.9 bits (106), Expect = 2e-15
Identities = 165/238 (69%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 38082 CAATCATTACCA-CCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140
|||||||| || || | || || | || | ||| || ||||||||||| || || ||
Sbjct 1343 CAATCATTGCCCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTT 1284
Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200
|||||| || | || | || || || || ||||| ||||| || || ||||| ||
Sbjct 1283 GTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTG 1224
Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCC 38260
||| | || | ||||| || || |||||| ||| || || | | |||||| |
Sbjct 1223 ATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACT 1164
Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||| || || || ||||| || || || ||||||||||| || || || ||||||
Sbjct 1163 GGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCATG 1106
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| | |||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | ||| || || || || || || ||||| || || | |||
Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| || ||| ||| ||| ||| || || | | ||| || |||||
Sbjct 985 ATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACC 926
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATA 38310
|| | ||||| || || || |||| ||| || |||| ||
Sbjct 925 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 886
>seq1745
Length=53961
Score = 96.9 bits (106), Expect = 2e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || ||||||||||| ||||| ||||| || || || |
Sbjct 17016 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCA 17075
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | ||||| || ||||| || || || || ||||| | ||||| ||||| |||
Sbjct 17076 TCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTG 17135
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| ||| || ||| ||||| | | || || | || || || | || ||
Sbjct 17136 TCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 17195
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || ||||||| |||||| ||||| |||||||| ||
Sbjct 17196 GTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334938896868254
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |