Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1793 233 2e-56 seq1923 86.0 8e-12 >seq1793 Length=11804 Score = 233 bits (258), Expect = 2e-56 Identities = 627/947 (66%), Gaps = 24/947 (3%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || || || || || ||||| ||||| | | | | |||| || ||||| ||||| Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 |||||| || |||||||||||| || | || || ||||| ||||| || |||||| Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || ||||| || | || || ||| |||||| ||| | ||| | | ||||| | Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGA-G 7478 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAAT 62989 || | | || | ||| | ||| || | ||||| | |||| Sbjct 7477 CTTCTGGGCGCGG--ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGA 7420 Query 62990 CGTTCGAACTCGTCTCCCCAAA-CATT-GTCCAGTCCAGGACATTCATCCGGACACATCA 63047 || ||||| ||| ||| | || | | | || || || || |||| |||||||| | Sbjct 7419 GCCTCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGA 7362 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||| || |||| | || || || ||||| ||||||||||| ||||| || || | Sbjct 7361 GAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGA 7302 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 || || || | | | | ||||| || || ||||| || ||||||||| Sbjct 7301 GGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACT 7242 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | ||||| ||||| || |||| ||| ||||| | | || || || ||||| | Sbjct 7241 CAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGC 7182 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | ||||| |||| ||||| || ||||| || | |||| | ||| ||||| | |||| Sbjct 7181 CACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCAT 7122 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGA 63345 |||| ||||| ||||| || | || || ||| ||||||| || | ||| Sbjct 7121 TGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTG- 7063 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || || || || || |||||||| ||||| | ||||| || | ||| |||||||| Sbjct 7062 -AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGAT 7004 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 |||||| || || |||||| |||||| | || || ||| |||| ||| | Sbjct 7003 GCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGG 6944 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | ||| ||||| ||||| || || | || || | || || Sbjct 6943 AGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTT 6884 Query 63526 GTACGTCTCAAT----AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGC 63580 |||||| ||||| ||| | | | | || || |||| || || ||||||||| Sbjct 6883 GTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACACGC 6829 Query 63581 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63640 || | ||| ||||| |||| || || |||||| ||| | |||| | ||| ||| Sbjct 6828 ATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGATCGC 6769 Query 63641 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 |||| ||| || || ||||| || | ||| ||||||| ||||| Sbjct 6768 TCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 >seq1923 Length=107003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 193/286 (67%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 32931 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 32988 ||||| || |||| || || ||| | || || || ||||| || || || |||| Sbjct 8104 TATGTGTCGATCAGCAACGAGTATG--TCTCAGAGTGGATGTTCTCCATCATGATCTGAA 8161 Query 32989 ATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAAT 33048 | ||||||||||||| || || | || ||| || || | ||||| ||| | | | Sbjct 8162 ACCCGTAGAAGCATCGGGCTTCTGGAACCTGAACCTCGCCGCTGAATCGCTCTACCAGGT 8221 Query 33049 TTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 33108 | || || || || |||||| ||| ||||| || |||| | || || || |||| Sbjct 8222 TCTCGTTGACGATGCCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGAGAGATGAAGTATT 8281 Query 33109 TTTCGTC-TGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 33165 | ||||| | | | | ||||||||||| | | ||| || || | ||| | |||| Sbjct 8282 TCTCGTCATCATTCAATCGATTATTCCAATCGTGCAGATCCTTTGAGAGATCAATCTCTT 8341 Query 33166 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | ||||||| || || ||||| || || || ||||| | ||| || Sbjct 8342 CGGCTGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTGCCAAAT 8387 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | || | |||||| || || || || Sbjct 7755 CAGGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGG 7814 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| | ||| ||||| || |||||||| ||||| ||||| | || ||||| Sbjct 7815 CCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAG 7874 Query 32781 ATTCCTTCTACTGCCGCAAAGGC 32803 || || || || || |||||||| Sbjct 7875 ATGCCCTCAACAGCGGCAAAGGC 7897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633615889906400