Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1745 136 3e-27
seq1893 134 1e-26
seq1479 100 2e-16
>seq1745
Length=53961
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || || || ||||| | || || || ||| |||| || || ||||| |
Sbjct 17233 AAGATGCAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 17174
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| ||| | ||| || |||| || ||||| |||||||| || || || || |||
Sbjct 17173 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGAT 17114
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || ||||| ||||||||| | |||||| ||||||| | ||| |||
Sbjct 17113 CAGCAGCGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 17054
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|||||||| || || |||| | || || || ||||| ||||||| ||
Sbjct 17053 AACATTCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGACTGCGCGGGGG 17004
>seq1893
Length=9943
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| ||||| || || || || || | || | || |||||| |||
Sbjct 1107 ATGCAAATTTTTGTCAAAACCTTGACAGGCAAGACAATTACCTTGGAGGTGGAATCCAGT 1166
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | |||| ||||||||||| ||||| |||||||| || |||||
Sbjct 1167 GATACTATTGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAG 1226
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || ||||| || || ||||| || ||| ||||| | ||||||||||
Sbjct 1227 CAACGTCTCATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACTCTGAGCGATTACAAC 1286
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||| | ||| | ||| | || |||| |||||
Sbjct 1287 ATCCAGAAGGAGAGCACCCTGCATCTCGTTCTTCGCCTGCGTGGAGG 1333
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | ||||| || || |||| ||||| || || | ||
Sbjct 576 ATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 635
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| ||| ||||| ||||||||||| || || || || ||
Sbjct 636 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 695
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| || | || ||| ||| || | ||||| ||||||
Sbjct 696 CAGCGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAAC 755
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| || || ||||| || | ||| | || ||||
Sbjct 756 ATCCAGAAGGAATCTACGCTGCATCTCGTCCTGCG 790
Score = 102 bits (112), Expect = 7e-17
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317
|| || || || || || |||| || | ||| | |||| ||| ||||| || |||
Sbjct 918 ACCCTCGAGGTTGAGTCCTCCGACACTATTGACAACGTCAAGTCAAAGATTCAGGATAAG 977
Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377
|| || || || || || || |||||||| || || || ||||| || | || |||
Sbjct 978 GAAGGGATCCCTCCGGACCAGCAACGTCTGATTTTCGCTGGCAAGCAACTTGAAGATGGG 1037
Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|||||| ||||||| |||||||||||||| ||||| || | ||||| || |||||
Sbjct 1038 CGCACCCTCTCCGACTACAACATTCAAAAGGAATCAACACTTCATTTGGTGTTGCG 1093
>seq1479
Length=130260
Score = 100 bits (110), Expect = 2e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || |||||||| |||| || || || || || | || ||| |
Sbjct 49626 TTTCGTGAAGACGCTGACGGGTAAAACCATCACCCTCGAGGTCGAGTCCTCTGACACCAT 49567
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| ||||| || ||||||||||||||||| || || || || || |
Sbjct 49566 CGACAATGTCAAGTCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATT 49507
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| || | |||||| ||| ||| | ||||| ||||| || |||||
Sbjct 49506 GATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTGTCCGACTACAATATCCAAAA 49447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419717595205210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |