Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1893 174 3e-38 seq1745 145 1e-29 seq1479 125 1e-23 seq1270 102 2e-16 >seq1893 Length=9943 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| || | || ||||| || || || |||||||| || ||||| Sbjct 802 CCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 743 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || ||||| || |||| || ||||| || || Sbjct 742 AGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGG 683 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||||| |||||| ||||||||||| | ||| || || Sbjct 682 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACC 623 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || ||||| ||||| ||||| |||||||| ||| Sbjct 622 TCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATGATG 572 Score = 158 bits (174), Expect = 2e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || || || || || ||||| ||||| || |||||| Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||||| || ||||| || || | ||| ||||| || || Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || |||||||||| ||||||| || || ||||| | || || || Sbjct 985 ATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACC 926 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 || | ||| ||||| || || || ||||||||||||| || Sbjct 925 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 886 >seq1745 Length=53961 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| ||||| || |||| |||||||| || ||| ||| || || ||||| || ||| Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | ||| || || || || ||||||| || || || || || Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || ||||||||||| |||||||| | |||||| || |||||||| | || || || Sbjct 17123 GATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 17182 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||| ||||| |||||||| |||||||| Sbjct 17183 CTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1479 Length=130260 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 |||||||| || || ||||| || || | ||||| || | ||||| |||||||| || Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || ||||| || |||||||| || || || | |||||| ||| Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||||||||| ||||| || ||||| ||||| Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAA 49625 >seq1270 Length=27383 Score = 102 bits (112), Expect = 2e-16 Identities = 439/680 (65%), Gaps = 18/680 (3%) Strand=Plus/Minus Query 224969 CCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATA 225028 |||| ||| ||||||||||| | ||||| ||||| ||| | ||||| || |||| | Sbjct 25942 CCTG-GGCGTACCGCCACTGCAGATACTGATTGGGTGTCTTTTCCAGATGCATCTCGACG 25884 Query 225029 TGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAG 225088 || | | |||||||| | ||| | || |||| ||||||||||||| || | Sbjct 25883 TGCTCCAGCGCATGCTGCTTGATGTAGCCGATACGCAGGTTGGGATGCTTCTCGACCTTG 25824 Query 225089 CCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCA 225148 || | | || |||| |||||||| | |||||| || || | |||||||| || Sbjct 25823 CCGGAACTGGGAATGACCTCTCCGGTGAGCAGCTTGATCAGTGTCGATTTGCCCGCTCCG 25764 Query 225149 TTGGGGCCAATCACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGTTGC-T 225204 ||||| ||||| | | | | || || |||| | | ||| |||| || || Sbjct 25763 TTGGGACCAATGATGGCCACGCGAGACGACAGCGACAGCTGGCACGAGACTTCG--GCAA 25706 Query 225205 GA-AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCA-GCTTCATGATGGCA 225262 || || || || | || |||| | ||| |||| || || | |||||||| Sbjct 25705 GAGAGGGCTTGGGAGCCTTTGGGTACGTGTAGGACACGTTGGTCATGCGT-ATGATGGCT 25647 Query 225263 CGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACC 225322 ||| || || |||| || ||||| |||||| ||||||| || ||| | Sbjct 25646 CGGGTCTGCGACTTAATGCCGGTCAGGATGCCGGGCGGCGGGAACTTGAAC-TGGACGTT 25588 Query 225323 G--CGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACA 225380 | || || ||| |||||| | ||||| || ||| |||| || |||| || Sbjct 25587 GGACG-CCGACAGCGTGTAGTAGGCCTTTGCCTCCGGCCGCAGCTCCACAAAGGCAGCCA 25529 Query 225381 GGTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACA 225440 | || || || | |||||| ||| |||||| || ||| ||| | Sbjct 25528 GATTGCCCTTGTAGCAGGCGAGCTTCTTGTTTGGCTCGTAGTGGTAAATGTCCGTCGTGA 25469 Query 225441 CTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCC 225498 | ||| ||||| ||||||||||||||||| |||| ||| | | || ||| | Sbjct 25468 CATTGTCCAGGAACCCAGAGTCGTGGGACACGATGA--GACTGGTGATGTCCGTATGCGT 25411 Query 225499 CTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 |||||||| | ||||| || | |||| ||||| | ||||| || |||||||| Sbjct 25410 CTTGAGGTAGTTTTCTAGCCAGGCAATGTTGGCCACGTCGAGATGGTTGGTGGGTTCGTC 25351 Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618 || | || | ||| || | | || |||||||| | | | |||||||| ||||| Sbjct 25350 GAGCAAGAGCACGTCGGCCTTTCTCAGCATGGCGCGAGCCAAGGCGAGCTTCATCTTCCA 25291 Query 225619 GCCCCCGGACAGGGAGCCGA 225638 || || || |||||||||| Sbjct 25290 ACCACCCGAGAGGGAGCCGA 25271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921598967750480