Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1893 174 3e-38
seq1745 145 1e-29
seq1479 125 1e-23
seq1270 102 2e-16
>seq1893
Length=9943
Score = 174 bits (192), Expect = 3e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| |||| || | || ||||| || || || |||||||| || |||||
Sbjct 802 CCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 743
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| || ||||| || |||| || ||||| || ||
Sbjct 742 AGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGG 683
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||||| |||||| ||||||||||| | ||| || ||
Sbjct 682 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACC 623
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||| || || ||||| ||||| ||||| |||||||| |||
Sbjct 622 TCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATGATG 572
Score = 158 bits (174), Expect = 2e-33
Identities = 167/220 (76%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| ||||| || || || || || ||||| ||||| || ||||||
Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| | ||||| || ||||| || || | ||| ||||| || ||
Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||| || |||||||||| ||||||| || || ||||| | || || ||
Sbjct 985 ATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACC 926
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454
|| | ||| ||||| || || || ||||||||||||| ||
Sbjct 925 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 886
>seq1745
Length=53961
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| ||||| || |||| |||||||| || ||| ||| || || ||||| || |||
Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | ||||| || | ||| || || || || ||||||| || || || || ||
Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|| ||||||||||| |||||||| | |||||| || |||||||| | || || ||
Sbjct 17123 GATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 17182
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || ||||| ||||| |||||||| ||||||||
Sbjct 17183 CTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230
>seq1479
Length=130260
Score = 125 bits (138), Expect = 1e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|||||||| || || ||||| || || | ||||| || | ||||| |||||||| ||
Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || ||||| || ||||| || |||||||| || || || | |||||| |||
Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | |||||||||||| ||||| || ||||| |||||
Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAA 49625
>seq1270
Length=27383
Score = 102 bits (112), Expect = 2e-16
Identities = 439/680 (65%), Gaps = 18/680 (3%)
Strand=Plus/Minus
Query 224969 CCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATA 225028
|||| ||| ||||||||||| | ||||| ||||| ||| | ||||| || |||| |
Sbjct 25942 CCTG-GGCGTACCGCCACTGCAGATACTGATTGGGTGTCTTTTCCAGATGCATCTCGACG 25884
Query 225029 TGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAG 225088
|| | | |||||||| | ||| | || |||| ||||||||||||| || |
Sbjct 25883 TGCTCCAGCGCATGCTGCTTGATGTAGCCGATACGCAGGTTGGGATGCTTCTCGACCTTG 25824
Query 225089 CCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCA 225148
|| | | || |||| |||||||| | |||||| || || | |||||||| ||
Sbjct 25823 CCGGAACTGGGAATGACCTCTCCGGTGAGCAGCTTGATCAGTGTCGATTTGCCCGCTCCG 25764
Query 225149 TTGGGGCCAATCACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGTTGC-T 225204
||||| ||||| | | | | || || |||| | | ||| |||| || ||
Sbjct 25763 TTGGGACCAATGATGGCCACGCGAGACGACAGCGACAGCTGGCACGAGACTTCG--GCAA 25706
Query 225205 GA-AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCA-GCTTCATGATGGCA 225262
|| || || || | || |||| | ||| |||| || || | ||||||||
Sbjct 25705 GAGAGGGCTTGGGAGCCTTTGGGTACGTGTAGGACACGTTGGTCATGCGT-ATGATGGCT 25647
Query 225263 CGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACC 225322
||| || || |||| || ||||| |||||| ||||||| || ||| |
Sbjct 25646 CGGGTCTGCGACTTAATGCCGGTCAGGATGCCGGGCGGCGGGAACTTGAAC-TGGACGTT 25588
Query 225323 G--CGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACA 225380
| || || ||| |||||| | ||||| || ||| |||| || |||| ||
Sbjct 25587 GGACG-CCGACAGCGTGTAGTAGGCCTTTGCCTCCGGCCGCAGCTCCACAAAGGCAGCCA 25529
Query 225381 GGTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACA 225440
| || || || | |||||| ||| |||||| || ||| ||| |
Sbjct 25528 GATTGCCCTTGTAGCAGGCGAGCTTCTTGTTTGGCTCGTAGTGGTAAATGTCCGTCGTGA 25469
Query 225441 CTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCC 225498
| ||| ||||| ||||||||||||||||| |||| ||| | | || ||| |
Sbjct 25468 CATTGTCCAGGAACCCAGAGTCGTGGGACACGATGA--GACTGGTGATGTCCGTATGCGT 25411
Query 225499 CTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558
|||||||| | ||||| || | |||| ||||| | ||||| || ||||||||
Sbjct 25410 CTTGAGGTAGTTTTCTAGCCAGGCAATGTTGGCCACGTCGAGATGGTTGGTGGGTTCGTC 25351
Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618
|| | || | ||| || | | || |||||||| | | | |||||||| |||||
Sbjct 25350 GAGCAAGAGCACGTCGGCCTTTCTCAGCATGGCGCGAGCCAAGGCGAGCTTCATCTTCCA 25291
Query 225619 GCCCCCGGACAGGGAGCCGA 225638
|| || || ||||||||||
Sbjct 25290 ACCACCCGAGAGGGAGCCGA 25271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921598967750480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |