Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1793 425 1e-113 seq1923 241 2e-58 >seq1793 Length=11804 Score = 425 bits (470), Expect = 1e-113 Identities = 1244/1887 (66%), Gaps = 87/1887 (5%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || ||| |||| |||| || | || |||||||||||| |||||| Sbjct 8571 ACGGTGAACTGGATCGGCGCGGCGGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 8512 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || | |||||| | || | || |||| || ||| Sbjct 8511 AGACCCAGCTTCCAGCCGGCAAAGTGCATCGAGGTGATTTTGCCCATCGTG------GGG 8458 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915 || | | | || ||| || ||||| |||||| | ||||| |||| || || Sbjct 8457 TCTTTCATGTG------GATGTTCAGCGACTGCGACTGGTCAATGAAGG-CGCCGCGGTC 8405 Query 243916 TGCGGCCATGGTGATGAGGTCCTT---CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 |||||||| ||| | ||| ||| || ||||| | | |||||||||| | Sbjct 8404 GGCGGCCATC-TGAACAA--CCTGACGCTGCGAAATCTCCCAAACGGTCTTGTAGAGCGC 8348 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGC 244030 ||||| || | |||| || | ||||| || | || || || | | | |||| Sbjct 8347 CTTGATGTCGGCAGGGATG--TTGGGAATGTTTTGGATGGATCCGTTCTCGGCAATGATG 8290 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG 244090 || | |||| |||| |||||| |||| | |||| ||| || || | | Sbjct 8289 CGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACCAGGTCCTTGAGGAGCCACGGG 8230 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||| ||||| ||||| || | || || ||||||||||||| |||| || ||| Sbjct 8229 TTCACGACCTGGAACTCCCCAGCCAAGACACGGCGCTGGTAGATGTTGGACGTGTATGGC 8170 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| | ||| ||||||| || ||||| | || || || |||||||| | | | Sbjct 8169 TCGAAACACTCATTGTTGCCGAGGATCTGAGAGGTCGAGGCCGTGGGCATGGGAGCAAGC 8110 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 | || ||| | | || ||| || ||| | | || | || ||| |||||| Sbjct 8109 AACAAGGAGTTGCGGATACCATGCTCCTTGATTTGCTCCTTCAGATTGTCCCATTCCCAC 8050 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | || ||| |||| | ||||||||||||||| || | |||| | | Sbjct 8049 AGTTCAGA-AGGC--------TTGACGTTCCACATGTCAAACTGGAGAATACCCT--CCG 8001 Query 244331 ACGGGGCTG--CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 | | | || || || |||| | || ||||| | || ||| |||| | | Sbjct 8000 AGGCAGGTGATCCTTCAAAGGTGGAATAAGGACCCTGCTCCTTGGCAAGCTCCATGGACG 7941 Query 244389 C-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-- 244445 | ||| ||| ||||| ||||| ||||||||| ||| |||||||| || || |||| Sbjct 7940 CAGTCAAGGA-GGCGTGGTAGACGGTCTCGAAAATCTGCTTGTTCAACTCACGAGCCTCG 7882 Query 244446 --TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 || | || ||||| | | | | |||| ||||||| || ||||| || || Sbjct 7881 GGTGACTCA----AAGGGCAGACGGAGAGCGAGGAAGGCGTCGGCAAGACCCTGAACACC 7826 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 || |||||||||||||| ||| ||||| | || || ||||||||||| ||| Sbjct 7825 GACACCGATGGGTCTGTGGCGCATGTTGCTGTTGCGAGCCTCCTGCACGGGGTAATGGTT 7766 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATG--CGGACG-ACGTCGGCCAGCAG 244620 | ||||||| | |||||| ||||||||| | || | | || ||||| |||| Sbjct 7765 GACGTCGATGATCTTGTTTAGGTTGCGG---ACCACGACCTGAGTCACGTCATGCAGCTT 7709 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 ||||||||| || ||| | ||||| | | || | ||||| | ||||| Sbjct 7708 CTGAAAGTCATA-TCG-----AGCCTCGTTG-TAGTCA-----ACAAAGGCAGGAAGGGC 7661 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || || |||||||||||||||||||| |||| | || ||| | || |||||| || Sbjct 7660 GAGCGAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGT 7601 Query 244741 GCAGAGGTTACTGCACTT--GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 |||||| ||| | |||| |||||| || |||| || || ||| ||| |||||| Sbjct 7600 GCAGAGATTA--GAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAA 7543 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 || |||||||||||||||||||| |||||||| ||| || | | | | || | Sbjct 7542 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTAC 7483 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 ||||| | | || || ||| ||||| |||||||||| |||||| |||| Sbjct 7482 CAGAGCTTCTGGGCGCGGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTAC 7423 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 || ||||| ||||| || || ||| | |||||||||||| || |||||| Sbjct 7422 AGAGCCTCAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATG 7363 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 ||| |||| |||||| | || ||| | || ||||||||| || |||||||| ||||| Sbjct 7362 AGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCG 7303 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 |||| ||||||| | | ||| ||| ||| |||||| | || || | || Sbjct 7302 AGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAAC 7243 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 |||||||| || ||||||| ||||||| ||||| || | ||| || || ||||||||| Sbjct 7242 TCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTG 7183 Query 245159 CCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 || |||||||| || ||| || | |||||| | || || | || | | ||| Sbjct 7182 CCACCCTGGTCTACATATCTGGCCGTG-TTGTTGAACACTCGGAGCATGGGAATGACGCC 7124 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA 245277 || || ||||||||||| ||||| | ||| || | | || ||| | |||| Sbjct 7123 ATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCAC---GGATGC-GGTGGA 7068 Query 245278 C----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | | ||| | ||||| || |||||||| | ||||||| |||||| ||||| Sbjct 7067 CGTTGAGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCAT 7008 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT 245393 |||||||| |||||||| |||||||| || || |||||||| |||||||||| || Sbjct 7007 AGATGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCT 6948 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGA 245453 ||| | | | ||||| || || || ||||||||| ||| | ||| || | || Sbjct 6947 GGGGAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGA 6888 Query 245454 ACCCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTC 245512 |||||| | | | | || || ||||||||||| ||| | ||| | | Sbjct 6887 GGTTGTACGTTTCAATGACGCGC-TCAATGTTGTCGCCCCAGATGCCGACAGCGACACGC 6829 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAG 245569 || | | |||||||| |||| || || | | | ||| || | ||| || Sbjct 6828 ATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAG---CTTCAGGAGGTACGAT 6772 Query 245570 CGCTCGAGCGTCTTGAACCCAAAGTAC 245596 ||||| || |||||||| ||||||||| Sbjct 6771 CGCTCCAGAGTCTTGAAGCCAAAGTAC 6745 >seq1923 Length=107003 Score = 241 bits (266), Expect = 2e-58 Identities = 363/509 (71%), Gaps = 19/509 (4%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||||||||||||||| | ||||||| || || | | |||| | || | Sbjct 7963 AAGAAGGCGGACTGGGCTATTCACTGGATTCAGGACAAGGAATCCAGCTTCGCCCAGCGA 7904 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 | || |||||| |||| || ||||||||||||||| |||||||| ||||||||||| Sbjct 7903 TTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCCTCCATCTTT 7844 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||||| ||| || || | ||||||||| || |||||||| |||||||||||| | Sbjct 7843 TGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAACTCATCTCGCGC 7784 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 |||||||| ||||| | |||||||||||||| ||| |||| ||||| | |||| Sbjct 7783 GACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCG---CACCTGAAGCACCGT 7727 Query 42885 CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || ||| || || | ||||||||| || ||||| |||||| |||||||| Sbjct 7726 GCCAGCAAGCAGATCATCAAAGACATCATCACCGACGCCGTCACCATCGAGCAGGAGTTC 7667 Query 42945 CTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGT 43002 || || || | || |||||| | || |||||||||| | | || || ||| ||| Sbjct 7666 CTGACCGAGGCTTTG-CCGTGTGCTCTACTCGGCATGAA-CGCTACTCTGATGAAGCAGT 7609 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCT 43056 |||| | | |||||| |||| ||||| | | | |||| || || | | Sbjct 7608 ACATTGAATTCGTCGCTGACCGCCTCCT------GGTCGCTCTCGGCAACGAGAAGGTGT 7555 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 |||| ||| | |||||| || || ||||| |||||||| ||| ||||||||||||| Sbjct 7554 ACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCTCACTGGGTGGCAAGACCAACT 7495 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | || |||||||| |||| ||| |||||| Sbjct 7494 TCTTTGAGAAGCGAGTCGGCGAGTACCAG 7466 Score = 131 bits (144), Expect = 3e-25 Identities = 224/323 (69%), Gaps = 3/323 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || |||| |||||| ||||| |||||||| || | ||||| Sbjct 8378 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAAGAGATTGATCTCTCAAAGGAT 8319 Query 42369 ACGGCCGGCTGGGAG--TC-ACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || ||| | || | || ||| |||| || | ||| || |||| ||| Sbjct 8318 CTGCACGATTGGAATAATCGATTGAATGATGACGAGAAATACTTCATCTCTCACATCCTG 8259 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || ||||| ||||||||||||||||| ||||| |||||||||| | |||| Sbjct 8258 GCTTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTGGTAGAGCGATTCAGCGGC 8199 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| || || || ||||||||||| || ||||| || |||||| | Sbjct 8198 GAGGTTCAGGTTCCAGAAGCCCGATGCTTCTACGGGTTTCAGATCATGATGGAGAACATC 8139 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 ||||||||| ||| | ||| || |||| |||||| ||| | || | ||||||| Sbjct 8138 CACTCTGAGACATACTCGTTGCTGATCGACACATACATCAAGGAGCACGCCCAGCGTAAT 8079 Query 42606 GGGCTGTTCAAGGCCATGGAGAC 42628 ||||||| ||||| ||||| Sbjct 8078 TACTTGTTCAATGCCATCGAGAC 8056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315190175840