Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1893 89.7 4e-13 >seq1893 Length=9943 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || || || ||||| || |||||||||||||| ||||||||||| | Sbjct 1333 CCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTC 1274 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || ||||| ||||| || ||||| || || || ||||||||| || Sbjct 1273 AGAGTG-CGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGG 1215 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || || || |||||| ||| | | | | ||||| | ||||| Sbjct 1214 AATACCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCAC 1155 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 1154 CTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052557071268