Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1745 109 6e-19 seq1893 105 7e-18 seq1479 96.9 4e-15 >seq1745 Length=53961 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | ||||||||||| ||||| ||||| || ||| || || | Sbjct 17016 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCA 17075 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || ||||| || |||||||||||||| || | || | | |||||| Sbjct 17076 TCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTG 17135 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | || | |||| | | | |||||| || ||||| |||| ||||| Sbjct 17136 TCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 17194 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || ||||| || || || || ||||| ||||| || Sbjct 17195 CGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233 >seq1893 Length=9943 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | |||||| || | || || || ||||| |||||||| Sbjct 766 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAA 707 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || |||||||||||||| | || | || |||||||||| ||| | |||| |||| | Sbjct 706 ATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATT 648 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 647 GTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCAC 588 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 587 GAAAATCTGCAT 576 Score = 102 bits (112), Expect = 9e-17 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||||||||||||||| | ||| ||||||||||| ||||| || | Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || || ||||| |||||||| || || || |||||||| | || Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||| ||| ||| | |||| |||| ||| | | | |||||| || || | Sbjct 985 ATCCCTTCCTTATCC-TGAATCTTTGACTTGA-CGTTGTCAATAGTGTCGGAGGACTCAA 928 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | |||| || ||||| ||||| || || ||||| || Sbjct 927 CCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||||||||||| || || |||||||| |||||| || | || || | ||| Sbjct 1310 ATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTG 1251 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || ||||| || ||||| || | || | | ||||| | | ||| ||| Sbjct 1250 CTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTAT-CTTGAATTT 1192 Query 42125 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182 | | |||| ||| | | | || || || |||||||| || | || || || ||||| Sbjct 1191 TAGACTTGA-CGTTGTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCT 1133 Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || ||||| |||||||| Sbjct 1132 GTCAAGGTTTTGACAAAAATTTGCAT 1107 >seq1479 Length=130260 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 ||||||| |||||||| || | ||| || || | || || || ||||| || ||||| | Sbjct 49445 CCTTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAA 49504 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | | |||||||||| |||||| |||| | Sbjct 49505 TCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGT 49564 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||| || || || |||| ||||||||||| ||||| |||||||| || | Sbjct 49565 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGA 49624 Query 42199 A 42199 | Sbjct 49625 A 49625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543198988814560