Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1745 109 6e-19
seq1893 105 7e-18
seq1479 96.9 4e-15
>seq1745
Length=53961
Score = 109 bits (120), Expect = 6e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| |||||| || | ||||||||||| ||||| ||||| || ||| || || |
Sbjct 17016 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCA 17075
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| || ||||| || |||||||||||||| || | || | | ||||||
Sbjct 17076 TCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTG 17135
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| | || | |||| | | | |||||| || ||||| |||| |||||
Sbjct 17136 TCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 17194
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| || ||||| || || || || ||||| ||||| ||
Sbjct 17195 CGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233
>seq1893
Length=9943
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || | |||||| || | || || || ||||| ||||||||
Sbjct 766 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAA 707
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| |||||||||||||| | || | || |||||||||| ||| | |||| |||| |
Sbjct 706 ATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATT 648
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| || || || || | |||||||| ||||| || || ||||| ||
Sbjct 647 GTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCAC 588
Query 42197 AAAGATTTGCAT 42208
|| || |||||
Sbjct 587 GAAAATCTGCAT 576
Score = 102 bits (112), Expect = 9e-17
Identities = 156/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| |||| | ||||||||||||||| | ||| ||||||||||| ||||| || |
Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || ||| | || || || ||||| |||||||| || || || |||||||| | ||
Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | ||||| ||| ||| | |||| |||| ||| | | | |||||| || || |
Sbjct 985 ATCCCTTCCTTATCC-TGAATCTTTGACTTGA-CGTTGTCAATAGTGTCGGAGGACTCAA 928
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| |||| || ||||| ||||| || || ||||| ||
Sbjct 927 CCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891
Score = 91.5 bits (100), Expect = 2e-13
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064
||||| ||||||||||| || || |||||||| |||||| || | || || | |||
Sbjct 1310 ATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTG 1251
Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124
||| ||||| || ||||| || ||||| || | || | | ||||| | | ||| |||
Sbjct 1250 CTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTAT-CTTGAATTT 1192
Query 42125 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182
| | |||| ||| | | | || || || |||||||| || | || || || |||||
Sbjct 1191 TAGACTTGA-CGTTGTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCT 1133
Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | || || ||||| ||||||||
Sbjct 1132 GTCAAGGTTTTGACAAAAATTTGCAT 1107
>seq1479
Length=130260
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
||||||| |||||||| || | ||| || || | || || || ||||| || ||||| |
Sbjct 49445 CCTTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAA 49504
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | |||||||||||| | || | | |||||||||| |||||| |||| |
Sbjct 49505 TCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGT 49564
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || |||| ||||||||||| ||||| |||||||| || |
Sbjct 49565 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGA 49624
Query 42199 A 42199
|
Sbjct 49625 A 49625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543198988814560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |