Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1745 134 1e-26 seq1923 129 6e-25 seq1893 127 2e-24 seq1479 109 5e-19 >seq1745 Length=53961 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||| ||||| | ||||| |||||| || | || ||| || ||||| ||||| |||| Sbjct 17002 CTCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGC 17061 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 || ||||| ||| || |||||||| ||||| |||| | |||||||||||| || | Sbjct 17062 TCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGG 17121 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | || || ||||||||| || || ||||| | || | |||||| | | ||| | Sbjct 17122 GGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 17181 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | ||| || || ||||| ||||| || || |||||||| Sbjct 17182 CCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1923 Length=107003 Score = 129 bits (142), Expect = 6e-25 Identities = 299/448 (67%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||| | || || |||| || ||| || |||||| |||||||| ||| |||||| Sbjct 7912 GCCCAGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCC 7853 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || |||| |||| | || | ||||||||||| || || ||||| || Sbjct 7852 TCCATCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAACTC 7793 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTC 47312 |||||| | ||||| || ||||||||| |||||||||| || | |||| | | Sbjct 7792 ATCTCGCGCGACGAGGGTCTGCACACCGACTTTGCCTGCCTG-----CTGCACTCGCACC 7738 Query 47313 -GATCAAAAGTTGGA-CGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG 47370 || | || | | || | | ||| ||||| | |||| |||||| |||| | Sbjct 7737 TGAAGCACCGTGCCAGCAAGCAGATCATCAAAGACATCATCACCGACGCCGTCACCATCG 7678 Query 47371 AGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGA 47430 || |||||| | |||||||| |||| || || | || |||||||| ||| Sbjct 7677 AGCAGGAGTTCCTGACCGAGGCTTTGCCGTGTGCTCTACTCGGCATGAACGCTACTCTGA 7618 Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGA 47490 ||| ||||||| ||||| ||||| |||||||| || || || | ||| Sbjct 7617 TGAAGCAGTACATTGAATTCGTCGCTGACCGCCTCCTGGTCGCTCTCGGCAACGAGAAGG 7558 Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 | ||| | || | || || || || || ||| | ||||| || || | |||||||||| Sbjct 7557 TGTACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCTCACTGGGTGGCAAGACCA 7498 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| || |||||||| |||||||| || Sbjct 7497 ACTTCTTTGAGAAGCGAGTCGGCGAGTA 7470 >seq1893 Length=9943 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | |||||| || || || || ||||| ||| | Sbjct 802 CCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 743 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| | |||| ||||||||| || ||||| Sbjct 742 AGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGG 683 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || ||||| | |||| |||||| | |||||| Sbjct 682 ATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGAC 624 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || |||||||| || || || || |||||||||||| Sbjct 623 CTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATG 575 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||||||| | || || || |||||||| ||||| ||| Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || |||||| | |||| || ||||| || ||||| Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| ||| ||| | | || ||||| |||| || | ||||| | ||| | Sbjct 985 ATCCCTTCCTTATCC-TGAATCTTTGACTTGACGTTG-TCAATAGTGTCGGAGGACTCAA 928 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 | |||| ||| | || ||||| ||||| || || || Sbjct 927 CCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 >seq1479 Length=130260 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| |||||||| ||| || || || ||| || || || || || ||| | ||| Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || ||||| || |||||||||||| |||||| ||||| | ||| Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||| | |||||| |||| ||| | ||||| || ||||| || || || ||| Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAAA 49626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488710392160