Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1745 134 1e-26
seq1923 129 6e-25
seq1893 127 2e-24
seq1479 109 5e-19
>seq1745
Length=53961
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944
|||| ||||| | ||||| |||||| || | || ||| || ||||| ||||| ||||
Sbjct 17002 CTCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGC 17061
Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004
|| ||||| ||| || |||||||| ||||| |||| | |||||||||||| || |
Sbjct 17062 TCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGG 17121
Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
| || || ||||||||| || || ||||| | || | |||||| | | ||| |
Sbjct 17122 GGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 17181
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| |||| ||| | ||| || || ||||| ||||| || || ||||||||
Sbjct 17182 CCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230
>seq1923
Length=107003
Score = 129 bits (142), Expect = 6e-25
Identities = 299/448 (67%), Gaps = 7/448 (2%)
Strand=Plus/Minus
Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192
||| | || || |||| || ||| || |||||| |||||||| ||| ||||||
Sbjct 7912 GCCCAGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCC 7853
Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252
| || |||| |||| | || | ||||||||||| || || ||||| ||
Sbjct 7852 TCCATCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAACTC 7793
Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTC 47312
|||||| | ||||| || ||||||||| |||||||||| || | |||| | |
Sbjct 7792 ATCTCGCGCGACGAGGGTCTGCACACCGACTTTGCCTGCCTG-----CTGCACTCGCACC 7738
Query 47313 -GATCAAAAGTTGGA-CGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG 47370
|| | || | | || | | ||| ||||| | |||| |||||| |||| |
Sbjct 7737 TGAAGCACCGTGCCAGCAAGCAGATCATCAAAGACATCATCACCGACGCCGTCACCATCG 7678
Query 47371 AGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGA 47430
|| |||||| | |||||||| |||| || || | || |||||||| |||
Sbjct 7677 AGCAGGAGTTCCTGACCGAGGCTTTGCCGTGTGCTCTACTCGGCATGAACGCTACTCTGA 7618
Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGA 47490
||| ||||||| ||||| ||||| |||||||| || || || | |||
Sbjct 7617 TGAAGCAGTACATTGAATTCGTCGCTGACCGCCTCCTGGTCGCTCTCGGCAACGAGAAGG 7558
Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550
| ||| | || | || || || || || ||| | ||||| || || | ||||||||||
Sbjct 7557 TGTACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCTCACTGGGTGGCAAGACCA 7498
Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| || |||||||| |||||||| ||
Sbjct 7497 ACTTCTTTGAGAAGCGAGTCGGCGAGTA 7470
>seq1893
Length=9943
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | |||||| || || || || ||||| ||| |
Sbjct 802 CCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 743
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || || || |||||| | |||| ||||||||| || |||||
Sbjct 742 AGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGG 683
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| | | || ||||| | |||| |||||| | ||||||
Sbjct 682 ATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGAC 624
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || |||||||| || || || || ||||||||||||
Sbjct 623 CTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATG 575
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||||||||||||| | || || || |||||||| ||||| |||
Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || || |||||| | |||| || ||||| || |||||
Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| || ||||| ||| ||| | | || ||||| |||| || | ||||| | ||| |
Sbjct 985 ATCCCTTCCTTATCC-TGAATCTTTGACTTGACGTTG-TCAATAGTGTCGGAGGACTCAA 928
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
| |||| ||| | || ||||| ||||| || || ||
Sbjct 927 CCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891
>seq1479
Length=130260
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
||||| |||||||| ||| || || || ||| || || || || || ||| | |||
Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
||||||||||| || ||||| || |||||||||||| |||||| ||||| | |||
Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||| | |||||| |||| ||| | ||||| || ||||| || || || |||
Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAAA 49626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475488710392160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |