Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1893 122 8e-23 seq1793 89.7 5e-13 seq1745 89.7 5e-13 seq1479 89.7 5e-13 >seq1893 Length=9943 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | ||| || |||||||||||||| || || || ||| Sbjct 1108 ATGCCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCG 1049 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | ||| || || ||| | |||| |||||||||||||| Sbjct 1048 GAGAGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGA 989 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| ||||| ||| |||| || | || | |||||||| ||||| Sbjct 988 GGGATCCCTTCCTTATCCTGAATCTTTGACTTGA-CGTTGTCAATAGTGTCGGAGGACTC 930 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || ||||| |||| || ||||| || || || || || Sbjct 929 AACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||||||||| |||||||| ||||| || || ||| Sbjct 805 ATGCCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCG 746 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||| || || ||| | |||| ||| |||||||||| Sbjct 745 --GACAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCG 688 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || ||||| || || || ||||| ||| |||| || | ||||||||| |||| Sbjct 687 GAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACT 628 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || | || |||||||| || || || || ||||| ||||| Sbjct 627 CGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || |||||||| || ||||| ||||| || |||||||| Sbjct 1333 CCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTC 1274 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || ||||| || | || | |||||||| ||||| ||| Sbjct 1273 AGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGA 1214 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| |||||||||||||| |||| || | || | || || || || || Sbjct 1213 ATACCTTCCTTATCTTGAATTTTAGACTTGA-CGTTGTCAATAGTATCACTGGATTCCAC 1155 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || ||||| || | ||||| |||||||||||||| Sbjct 1154 CTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 >seq1793 Length=11804 Score = 89.7 bits (98), Expect = 5e-13 Identities = 210/314 (67%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 123445 ACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCA 123504 |||||| ||| | |||||||||||| || ||| |||||| | |||| || || Sbjct 7347 ACGGCGACTGGACTCTCATGTGTCCCAATGAGTGCCCCGGCCTTGCCGACTGCTATGGTG 7406 Query 123505 ATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGT-- 123562 | ||||||| | |||||| | |||||||| || ||||| || | | || Sbjct 7407 AGGAGTTTGAGGCTCTGTACGAAAAGTACGAGCGTGAGGGCAA---GGGTCGCAAGACCA 7463 Query 123563 TCCG-GCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGT 123621 |||| || | | | | | | ||| | ||| | || || ||||| | || | Sbjct 7464 TCCGCGCCCAGAAGCTCTGGTACTCCATTTTGGAAGCTCAGACTGAGACCGGCAACCCCT 7523 Query 123622 ACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAA 123681 |||||||||||| || || ||||||| ||| | ||| |||| ||| | ||||| || | Sbjct 7524 TCATGCTCTACAAGGATGCTTGCAACAAGAAGAGCAACCAGAAGAACCTAGGAACCATCA 7583 Query 123682 AATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGT 123741 | || |||||| ||| | || |||||||||||| || | || | |||||||| | Sbjct 7584 GAAGTTCTAATCTCTGCACGGAGATTATCGAATACTCCGCCCCGGACGAGGTGGCCGTCT 7643 Query 123742 GTAATTTGGCTTCG 123755 | || | |||||| Sbjct 7644 GCAACCTTGCTTCG 7657 >seq1745 Length=53961 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| ||||| || | || ||| | || || || ||||| || || || || ||||| Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| || | ||||| || || | || | ||| ||||| ||||| || Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || ||||| || |||| || | ||||||||||||||| || Sbjct 17123 GATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 17182 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || || || ||||| || || || |||||| Sbjct 17183 CTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATC 17231 >seq1479 Length=130260 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 ||||||||||||| || ||| | |||| ||| || | ||| || || ||| | | Sbjct 49445 CCTTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAA 49504 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 ||||||| |||||||| || ||||| || || || || || ||||| |||| | Sbjct 49505 TCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGT 49564 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||| || |||||||| ||||| || | ||||| || || || || || || | Sbjct 49565 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGA 49624 Query 45331 AA 45332 || Sbjct 49625 AA 49626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991707818640