Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1923 168 7e-37
seq1893 129 6e-25
seq1745 127 2e-24
seq1479 114 1e-20
>seq1923
Length=107003
Score = 168 bits (186), Expect = 7e-37
Identities = 346/504 (69%), Gaps = 14/504 (3%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || |||||||| || || || || || ||| || |||
Sbjct 7464 TTCTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGTGAGATGTTT 7523
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720
||| ||||| ||||||||||| || ||||| ||| | |||||| || ||||
Sbjct 7524 TCCATGAAATCAAAGGGGTTGGCCGTCTTGTACACCTTCTCGTTGCCGAG-AG--CGACC 7580
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
|| || | ||| || ||||| || ||||| ||| ||| | | || | | | || ||
Sbjct 7581 AGGAGGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCATG-CCGAG 7639
Query 132780 CAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
||| |||| ||||| || ||||| || || |||||||||| ||| ||||||||||
Sbjct 7640 TAGA-GCACACGGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCGTCGGTGA 7698
Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898
||| || | | | | | ||| | || ||| || ||| | || || ||| |
Sbjct 7699 TGATGTCTTTGATGATCTGCTTGCTGGCACGGTGCTTCAGGTGCGAGTGCAGCAGGCAGG 7758
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
|||||||| |||| |||||||| | || ||||||||||| ||| |||| |||||
Sbjct 7759 CAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCCGG 7818
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
|||| | ||| || || || |||||||| |||| ||| || ||| ||||||| ||
Sbjct 7819 GCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGATGC 7878
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGAT 133076
|||| || || || || || || | |||| | |||| ||| ||| ||| ||| ||
Sbjct 7879 CCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTGGATTCCTTGTCCTG--AAT 7936
Query 133077 CCAGCGCAGCGCCCATTCGGCCTT 133100
|||| | | ||||| || |||||
Sbjct 7937 CCAGTGAATAGCCCAGTCCGCCTT 7960
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||| || ||| || | || ||||| | ||||||||| ||| |||||
Sbjct 8103 GTATGTGTCGATCAGCAACGAGTATGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAA 8162
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || || || ||||| || || ||| ||||| ||||| ||
Sbjct 8163 CCCGTAGAAGCATCGGGCTTCTGGAACCTGAACCTCGCCGCTGAATCGCTCTACCAGGTT 8222
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||||||||| |||||| || || ||||| | ||| |||||| |
Sbjct 8223 CTCGTTGACGATGCCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGAGAGATGAAGTATTT 8282
Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| || ||||| || | ||| ||| || ||||| || || || | ||| ||
Sbjct 8283 CTCGTCATCATTCAATCGATTATTCCAATCGTGCAGATCCTTTGAGAGATCAATCTCTTC 8342
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || ||||||||||| ||||||||
Sbjct 8343 GGCTGTCCAGAAGGAGGCCTCGGCTTTCTTGTACAT 8378
>seq1893
Length=9943
Score = 129 bits (142), Expect = 6e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| | ||
Sbjct 576 ATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 635
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || ||| || | ||||| ||||| || || | |||||
Sbjct 636 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 695
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| ||||| || || || || | || || || ||||||||||
Sbjct 696 CAGCGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAAC 755
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||| | ||||||||| | || ||||||
Sbjct 756 ATCCAGAAGGAATCTACGCTGCATCTCGTCCTGCGT 791
Score = 123 bits (136), Expect = 2e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || || || ||||| ||||| ||| |||| || ||| || ||||||
Sbjct 886 TAGTCGTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTA 945
Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | |||| | || ||| || | || || || || || || | ||||| || ||
Sbjct 946 TTGACAACG-TCAAGTCAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAGCAACGT 1004
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| |||| ||| ||||| || || || || | |||||||||| |||||||||||| |||
Sbjct 1005 CTGATTTTCGCTGGCAAGCAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAA 1064
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| | || || ||||||||| ||||| | |||| |||
Sbjct 1065 AAGGAATCAACACTTCATTTGGTGTTGCGTCTCCGAGGTGGC 1106
>seq1745
Length=53961
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| ||||| || ||||| || || |||||| |||| || ||| |
Sbjct 17233 AAGATGCAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 17174
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | || || || | ||||| || ||||| ||| | ||
Sbjct 17173 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGAT 17114
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | || ||||||||||| || || | |||||||| | |||||||
Sbjct 17113 CAGCAGCGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 17054
Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||||| ||| || || || |||||||||||
Sbjct 17053 AACATTCAGAAGGAGAGC-ACCCTCCACTTGGTGCTGCG 17016
>seq1479
Length=130260
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || ||||| ||||| |||||||||||| |||| |||||| || | |||| | |
Sbjct 49625 TTCGTGAAGACGCTGACGGGTAAAACCATCACCCTCGAGGTCGAGTCCTCTGACACCATC 49566
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || ||||||| ||||| ||||| ||||| | ||||| ||||| |
Sbjct 49565 GACAATGTCAAGTCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATTG 49506
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|||| ||| ||||| || || || || | || ||||| ||||||||| |||||||||
Sbjct 49505 ATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTGTCCGACTACAATATCCAAAAG 49446
Query 38433 G 38433
|
Sbjct 49445 G 49445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500160083106560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |