Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1923 168 7e-37 seq1893 129 6e-25 seq1745 127 2e-24 seq1479 114 1e-20 >seq1923 Length=107003 Score = 168 bits (186), Expect = 7e-37 Identities = 346/504 (69%), Gaps = 14/504 (3%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || |||||||| || || || || || ||| || ||| Sbjct 7464 TTCTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGTGAGATGTTT 7523 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| ||||| ||||||||||| || ||||| ||| | |||||| || |||| Sbjct 7524 TCCATGAAATCAAAGGGGTTGGCCGTCTTGTACACCTTCTCGTTGCCGAG-AG--CGACC 7580 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 || || | ||| || ||||| || ||||| ||| ||| | | || | | | || || Sbjct 7581 AGGAGGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCATG-CCGAG 7639 Query 132780 CAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||| ||||| || ||||| || || |||||||||| ||| |||||||||| Sbjct 7640 TAGA-GCACACGGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCGTCGGTGA 7698 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| || | | | | | ||| | || ||| || ||| | || || ||| | Sbjct 7699 TGATGTCTTTGATGATCTGCTTGCTGGCACGGTGCTTCAGGTGCGAGTGCAGCAGGCAGG 7758 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 |||||||| |||| |||||||| | || ||||||||||| ||| |||| ||||| Sbjct 7759 CAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCCGG 7818 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||| | ||| || || || |||||||| |||| ||| || ||| ||||||| || Sbjct 7819 GCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGATGC 7878 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGAT 133076 |||| || || || || || || | |||| | |||| ||| ||| ||| ||| || Sbjct 7879 CCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTGGATTCCTTGTCCTG--AAT 7936 Query 133077 CCAGCGCAGCGCCCATTCGGCCTT 133100 |||| | | ||||| || ||||| Sbjct 7937 CCAGTGAATAGCCCAGTCCGCCTT 7960 Score = 140 bits (154), Expect = 3e-28 Identities = 197/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| || ||| || | || ||||| | ||||||||| ||| ||||| Sbjct 8103 GTATGTGTCGATCAGCAACGAGTATGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAA 8162 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || || || ||||| || || ||| ||||| ||||| || Sbjct 8163 CCCGTAGAAGCATCGGGCTTCTGGAACCTGAACCTCGCCGCTGAATCGCTCTACCAGGTT 8222 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||||||||| |||||| || || ||||| | ||| |||||| | Sbjct 8223 CTCGTTGACGATGCCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGAGAGATGAAGTATTT 8282 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| || ||||| || | ||| ||| || ||||| || || || | ||| || Sbjct 8283 CTCGTCATCATTCAATCGATTATTCCAATCGTGCAGATCCTTTGAGAGATCAATCTCTTC 8342 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || ||||||||||| |||||||| Sbjct 8343 GGCTGTCCAGAAGGAGGCCTCGGCTTTCTTGTACAT 8378 >seq1893 Length=9943 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| | || Sbjct 576 ATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 635 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || ||| || | ||||| ||||| || || | ||||| Sbjct 636 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 695 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 696 CAGCGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAAC 755 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | ||||||||| | || |||||| Sbjct 756 ATCCAGAAGGAATCTACGCTGCATCTCGTCCTGCGT 791 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || || || ||||| ||||| ||| |||| || ||| || |||||| Sbjct 886 TAGTCGTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTA 945 Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | |||| | || ||| || | || || || || || || | ||||| || || Sbjct 946 TTGACAACG-TCAAGTCAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAGCAACGT 1004 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || |||| ||| ||||| || || || || | |||||||||| |||||||||||| ||| Sbjct 1005 CTGATTTTCGCTGGCAAGCAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAA 1064 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| | || || ||||||||| ||||| | |||| ||| Sbjct 1065 AAGGAATCAACACTTCATTTGGTGTTGCGTCTCCGAGGTGGC 1106 >seq1745 Length=53961 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || ||||| || || |||||| |||| || ||| | Sbjct 17233 AAGATGCAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 17174 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || || | ||||| || ||||| ||| | || Sbjct 17173 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGAT 17114 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||||||||| || || | |||||||| | ||||||| Sbjct 17113 CAGCAGCGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 17054 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||||| ||| || || || ||||||||||| Sbjct 17053 AACATTCAGAAGGAGAGC-ACCCTCCACTTGGTGCTGCG 17016 >seq1479 Length=130260 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || ||||| ||||| |||||||||||| |||| |||||| || | |||| | | Sbjct 49625 TTCGTGAAGACGCTGACGGGTAAAACCATCACCCTCGAGGTCGAGTCCTCTGACACCATC 49566 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| ||||| ||||| | ||||| ||||| | Sbjct 49565 GACAATGTCAAGTCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATTG 49506 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| || || || || | || ||||| ||||||||| ||||||||| Sbjct 49505 ATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTGTCCGACTACAATATCCAAAAG 49446 Query 38433 G 38433 | Sbjct 49445 G 49445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160083106560