Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1893 141 2e-28 seq1745 136 9e-27 >seq1893 Length=9943 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || ||| ||| || || || ||||||||| ||||| | |||||||| Sbjct 1316 AACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTC 1257 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || || || || ||||| || || |||||||| ||||| || ||||| Sbjct 1256 CAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTG 1197 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 |||||| ||||||||| ||||| || || ||| |||||| || | ||||| || Sbjct 1196 AATTTTAGACTTGACGTTGTCAATAGTATC---ACTGGATTCCACCTCCAAGGTAATTGT 1140 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| ||||| || || | |||||| Sbjct 1139 CTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| |||| ||||| | ||||||||| Sbjct 784 ACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCG 725 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 724 AGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 665 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| || || |||||||| || || || |||||||| | ||||| Sbjct 664 ATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTG 605 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 604 CCGGTGAGTGTCTTCACGAAAATCTGCAT 576 >seq1745 Length=53961 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || ||| ||| || ||||| ||||| ||| || || | Sbjct 17013 AGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGG 17072 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| |||||||| || || || ||||| ||||| || || || || || || ||||| Sbjct 17073 CCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCC 17132 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || |||||| || ||||||||||| ||| ||||| || ||||| Sbjct 17133 TTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTG 17192 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || |||| ||||| ||||| | ||||| Sbjct 17193 ATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109452686216078