Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1745 98.7 6e-16 seq1893 93.3 3e-14 >seq1745 Length=53961 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||||||||| ||||| ||| | || |||| || Sbjct 17022 ACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 17081 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || ||||| ||||| || | || | || |||||||| | Sbjct 17082 AGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTGTCCTGA 17141 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || | ||| || |||| ||| || || || Sbjct 17142 ATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTC 17201 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || || || || ||||||||||| || Sbjct 17202 CCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233 >seq1893 Length=9943 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| ||| ||| || |||||||| ||||| || ||| | || |||| Sbjct 1091 CAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCCATC 1032 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || || || || || || || ||||||||||| | || | ||| ||||| || Sbjct 1031 TTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTTATC 972 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | || | || || |||||| |||| ||| ||||| Sbjct 971 CTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAATGGT 912 Query 34949 TTTTCCCGTGAGAGTCTTCAC 34969 || || || || ||||| || Sbjct 911 CTTGCCAGTCAGGGTCTTGAC 891 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| || || || || || || || Sbjct 767 TTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAA 708 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| |||||||| | || | ||||||||||| |||||| ||||| | Sbjct 707 AATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTGAC--A 650 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | ||| || || | ||| ||||| || || ||||| |||| Sbjct 649 T--TGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCT 592 Query 34966 TCACAAAGATCTGCAT 34981 |||| || |||||||| Sbjct 591 TCACGAAAATCTGCAT 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625552535952