Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1693 127 2e-23 seq1893 113 4e-19 seq188 91.5 1e-12 >seq1693 Length=13545 Score = 127 bits (140), Expect = 2e-23 Identities = 333/506 (66%), Gaps = 3/506 (1%) Strand=Plus/Plus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | |||||||| || | |||| || || ||||| | || ||||| || || | Sbjct 7544 GATGCTAAGATTGACAAGAGCCAAGTGCACGAGATTGTCTTGGTCGGTGGTTCCACCCGC 7603 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206 ||||| ||||| | | | | || ||||| || || || || | || Sbjct 7604 ATTCCCCGAATTCAGAAGCTCATCACCGACTACTTCAACGGCAAGGAACCCAACAAGAGC 7663 Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266 | || || ||||||||||||||||| |||||||| ||||||| || |||||||| || Sbjct 7664 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTTCAAGCTGCCATTCTTTCCGGC 7723 Query 552267 CAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 | || | || ||| | || || | || | || | ||||| | ||||| || || Sbjct 7724 GACACTTCATCCAAATCCACCAATGAAATCCTGCTGCTTGATGTCGCGCCTCTTTCGCTC 7783 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 ||| | || || | || ||||| ||||| || | ||| ||||||||| || ||||| Sbjct 7784 GGTATTGAGACTGCCGGTGGTATGATGACCAAGTTGATCCCTAGAAATACCACCATTCCC 7843 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 || || ||| || || || || | || || || || ||| ||| || || Sbjct 7844 ACCAAGAAGTCTGAAGTCTTCTCCACCTTCTCCGACAACCAGCCTGGTGTGCTCATCCAG 7903 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 | | ||| || || ||| | || || || || || | | || | || | | Sbjct 7904 GTGTATGAGGGTGAGAGACAGAAGACCAAGGACAACAACCTCATGGGCAAGTTCGAGCTC 7963 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 ||||| || |||||||| || || || || |||||||| ||||| ||||| | ||| Sbjct 7964 ACTGGTATCCCCCCTGCTCCCCGCGGTGTCCCTCAAATTGAGGTTACCTTCGACCTTGAT 8023 Query 552564 GCCAATGGAATTTTGAATGTGACTGC 552589 ||||| || || |||||||| |||| Sbjct 8024 GCCAACGGTATCATGAATGTGTCTGC 8049 Score = 123 bits (136), Expect = 2e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| || ||||| || || ||||||||||||||||| || ||||||| Sbjct 6999 ATGCCGTCATCACTGTGCCTGCATACTTCAACGACTCACAACGTCAAGCCACCAAAGATG 7058 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | || ||||| || || || || ||||| ||||| ||||| || ||||| || Sbjct 7059 CTGGCCTGATCGCTGGTCTCAACGTGCTGCGTATCATCAACGAACCCACCGCTGCCGCCA 7118 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 |||| || || ||||| || | || |||| ||||| |||||||||||| Sbjct 7119 TTGCCTACGGTCTTGACAAGAAGGTCGAGGGTGAACGCAATGTTCTCATCTTTGAT 7174 >seq1893 Length=9943 Score = 113 bits (124), Expect = 4e-19 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 || || || || ||||| ||||| || || || || |||||||| ||| ||||| | Sbjct 1324 AGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATC-GCTCAGAGTGCG 1266 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| | || ||||| |||||||| || | ||||||||| |||||||| ||||| Sbjct 1265 ACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTC 1206 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 |||||||||||||| || || ||||| |||||| || || | || || | | Sbjct 1205 CTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTG-GATTCCACCTCCAAGG 1147 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || || || | ||||| || ||||||||||| Sbjct 1146 TAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 >seq188 Length=45544 Score = 91.5 bits (100), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 || || || || || || |||||| | |||||||| ||| || || ||||| || | || Sbjct 5403 ACCGTTCCTGCCTACTTCAATGACGCTCAACGTCAGAGC-ACCAAGGATGCGGGCCAGAT 5461 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || ||||||||| | ||| || | ||||| ||||| |||||||| ||||||||||| Sbjct 5462 CGCCGGTCTTAATGTTTTGCGTGTTGTTAATGAGCCTACGGCTGCTGCTCTTGCATATGG 5521 Query 550528 ACTTGATAA 550536 || || || Sbjct 5522 TCTGGAGAA 5530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029188432906660