Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1693 127 2e-23
seq1893 113 4e-19
seq188 91.5 1e-12
>seq1693
Length=13545
Score = 127 bits (140), Expect = 2e-23
Identities = 333/506 (66%), Gaps = 3/506 (1%)
Strand=Plus/Plus
Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146
||| | |||||||| || | |||| || || ||||| | || ||||| || || |
Sbjct 7544 GATGCTAAGATTGACAAGAGCCAAGTGCACGAGATTGTCTTGGTCGGTGGTTCCACCCGC 7603
Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206
||||| ||||| | | | | || ||||| || || || || | ||
Sbjct 7604 ATTCCCCGAATTCAGAAGCTCATCACCGACTACTTCAACGGCAAGGAACCCAACAAGAGC 7663
Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266
| || || ||||||||||||||||| |||||||| ||||||| || |||||||| ||
Sbjct 7664 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTTCAAGCTGCCATTCTTTCCGGC 7723
Query 552267 CAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323
| || | || ||| | || || | || | || | ||||| | ||||| || ||
Sbjct 7724 GACACTTCATCCAAATCCACCAATGAAATCCTGCTGCTTGATGTCGCGCCTCTTTCGCTC 7783
Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383
||| | || || | || ||||| ||||| || | ||| ||||||||| || |||||
Sbjct 7784 GGTATTGAGACTGCCGGTGGTATGATGACCAAGTTGATCCCTAGAAATACCACCATTCCC 7843
Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443
|| || ||| || || || || | || || || || ||| ||| || ||
Sbjct 7844 ACCAAGAAGTCTGAAGTCTTCTCCACCTTCTCCGACAACCAGCCTGGTGTGCTCATCCAG 7903
Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503
| | ||| || || ||| | || || || || || | | || | || | |
Sbjct 7904 GTGTATGAGGGTGAGAGACAGAAGACCAAGGACAACAACCTCATGGGCAAGTTCGAGCTC 7963
Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563
||||| || |||||||| || || || || |||||||| ||||| ||||| | |||
Sbjct 7964 ACTGGTATCCCCCCTGCTCCCCGCGGTGTCCCTCAAATTGAGGTTACCTTCGACCTTGAT 8023
Query 552564 GCCAATGGAATTTTGAATGTGACTGC 552589
||||| || || |||||||| ||||
Sbjct 8024 GCCAACGGTATCATGAATGTGTCTGC 8049
Score = 123 bits (136), Expect = 2e-22
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || ||||| || ||||| || || ||||||||||||||||| || |||||||
Sbjct 6999 ATGCCGTCATCACTGTGCCTGCATACTTCAACGACTCACAACGTCAAGCCACCAAAGATG 7058
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | || ||||| || || || || ||||| ||||| ||||| || ||||| ||
Sbjct 7059 CTGGCCTGATCGCTGGTCTCAACGTGCTGCGTATCATCAACGAACCCACCGCTGCCGCCA 7118
Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573
|||| || || ||||| || | || |||| ||||| ||||||||||||
Sbjct 7119 TTGCCTACGGTCTTGACAAGAAGGTCGAGGGTGAACGCAATGTTCTCATCTTTGAT 7174
>seq1893
Length=9943
Score = 113 bits (124), Expect = 4e-19
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315
|| || || || ||||| ||||| || || || || |||||||| ||| ||||| |
Sbjct 1324 AGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATC-GCTCAGAGTGCG 1266
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|||||| | || ||||| |||||||| || | ||||||||| |||||||| |||||
Sbjct 1265 ACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTC 1206
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
|||||||||||||| || || ||||| |||||| || || | || || | |
Sbjct 1205 CTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTG-GATTCCACCTCCAAGG 1147
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || || || || | ||||| || |||||||||||
Sbjct 1146 TAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107
>seq188
Length=45544
Score = 91.5 bits (100), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467
|| || || || || || |||||| | |||||||| ||| || || ||||| || | ||
Sbjct 5403 ACCGTTCCTGCCTACTTCAATGACGCTCAACGTCAGAGC-ACCAAGGATGCGGGCCAGAT 5461
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || ||||||||| | ||| || | ||||| ||||| |||||||| |||||||||||
Sbjct 5462 CGCCGGTCTTAATGTTTTGCGTGTTGTTAATGAGCCTACGGCTGCTGCTCTTGCATATGG 5521
Query 550528 ACTTGATAA 550536
|| || ||
Sbjct 5522 TCTGGAGAA 5530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029188432906660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |