Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1154 114 1e-20
>seq1154
Length=35070
Score = 114 bits (126), Expect = 1e-20
Identities = 267/399 (67%), Gaps = 4/399 (1%)
Strand=Plus/Plus
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048
|||||||||||| | | ||| ||||| || | ||||||||| ||| ||| | |
Sbjct 3065 ACGTAAAACTGAGCAAAGACGTGACACGGCGGCAACGCCATGAGGTGCAAATCTCGCGCG 3124
Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108
||||| |||| || |||||| | || || | || ||||| |||| ||| | |
Sbjct 3125 TTCCACGCGCTCATGATGATTCTCCGATCGTACGGCTTGTTTCTGAGCTTGTCGATTACC 3184
Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168
| |||||||| || ||| | || | ||| || | | | || |||||| ||
Sbjct 3185 TCGGCGAGCTGATCGACGCCCTTGCCAGTGTAATCCGTCTTTGCATCGACGTACTCGGCG 3244
Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30228
|| ||||| | ||| ||||| |||||||| ||||| || || || ||| | ||| |
Sbjct 3245 CCAAAATGGCGCCATTGGAAGCCGTACACGGGTCCAAGATCCCCAATTTCGCGCTGCGTG 3304
Query 30229 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CT 30286
| |||| ||||| | || || | ||| || ||| ||||||| ||||| || || |
Sbjct 3305 AGGCCCAAGTTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCAAATCTTGACGCCGGCG 3364
Query 30287 TCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 30346
|| | ||||| | | ||| | |||||| | ||||||||||| || | | ||
Sbjct 3365 TCGCTCAGAGCCAGCGAGGATGTGTTG-CCCTCT-ATGAACCACAGCAATTCGGCGATGA 3422
Query 30347 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385
|||| | ||| || | ||| || |||| ||||||||
Sbjct 3423 CGGCGCGCAGAAACACGCGCTTCGTGGTGATGAGGGGAA 3461
Score = 98.7 bits (108), Expect = 8e-16
Identities = 126/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTC 29858
|| |||| ||| |||| || || ||||| ||||| |||| | ||| | ||| ||
Sbjct 2804 TTGAGCGCGTCCTCGTGGTCGGCATAAACGTGCGCGTCGCCCATGACGTGAGTCAAGCTG 2863
Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918
|| || | || || |||||||| ||||||| ||||| || | |||||||| ||
Sbjct 2864 -CCAGGCACAAGATCGCACACGTGAGCAATCATGTGTGTGAGAAGCGCATAGCTGGCAAT 2922
Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969
||| || || ||||||||||||||||| | ||||||||||| ||||| ||
Sbjct 2923 GTTGAACGGCACCCCGAGCCCCATGTCGCAAGACCTCTGGTACAGCTGGCA 2973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408607470625082
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |