Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1154 114 1e-20 >seq1154 Length=35070 Score = 114 bits (126), Expect = 1e-20 Identities = 267/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 |||||||||||| | | ||| ||||| || | ||||||||| ||| ||| | | Sbjct 3065 ACGTAAAACTGAGCAAAGACGTGACACGGCGGCAACGCCATGAGGTGCAAATCTCGCGCG 3124 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 ||||| |||| || |||||| | || || | || ||||| |||| ||| | | Sbjct 3125 TTCCACGCGCTCATGATGATTCTCCGATCGTACGGCTTGTTTCTGAGCTTGTCGATTACC 3184 Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168 | |||||||| || ||| | || | ||| || | | | || |||||| || Sbjct 3185 TCGGCGAGCTGATCGACGCCCTTGCCAGTGTAATCCGTCTTTGCATCGACGTACTCGGCG 3244 Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30228 || ||||| | ||| ||||| |||||||| ||||| || || || ||| | ||| | Sbjct 3245 CCAAAATGGCGCCATTGGAAGCCGTACACGGGTCCAAGATCCCCAATTTCGCGCTGCGTG 3304 Query 30229 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CT 30286 | |||| ||||| | || || | ||| || ||| ||||||| ||||| || || | Sbjct 3305 AGGCCCAAGTTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCAAATCTTGACGCCGGCG 3364 Query 30287 TCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 30346 || | ||||| | | ||| | |||||| | ||||||||||| || | | || Sbjct 3365 TCGCTCAGAGCCAGCGAGGATGTGTTG-CCCTCT-ATGAACCACAGCAATTCGGCGATGA 3422 Query 30347 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 |||| | ||| || | ||| || |||| |||||||| Sbjct 3423 CGGCGCGCAGAAACACGCGCTTCGTGGTGATGAGGGGAA 3461 Score = 98.7 bits (108), Expect = 8e-16 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTC 29858 || |||| ||| |||| || || ||||| ||||| |||| | ||| | ||| || Sbjct 2804 TTGAGCGCGTCCTCGTGGTCGGCATAAACGTGCGCGTCGCCCATGACGTGAGTCAAGCTG 2863 Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918 || || | || || |||||||| ||||||| ||||| || | |||||||| || Sbjct 2864 -CCAGGCACAAGATCGCACACGTGAGCAATCATGTGTGTGAGAAGCGCATAGCTGGCAAT 2922 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||| || || ||||||||||||||||| | ||||||||||| ||||| || Sbjct 2923 GTTGAACGGCACCCCGAGCCCCATGTCGCAAGACCTCTGGTACAGCTGGCA 2973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408607470625082