Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1793 363 3e-95 seq1923 145 1e-29 >seq1793 Length=11804 Score = 363 bits (402), Expect = 3e-95 Identities = 1223/1877 (65%), Gaps = 78/1877 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | || ||||||| ||||| | ||||||||||| ||||| Sbjct 8571 ACGGTGAACTGGATCGGCGCGGCGGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 8512 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| ||||||| | |||||| | |||| ||| || | | || Sbjct 8511 AGACCCAGCTTCCAGCCGGCAAAGTGCATCGAGGTGATTTTGCCCATCGTGG------GG 8458 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 || | | |||| | |||||| ||||| |||||| ||||| | | | | | Sbjct 8457 TCTTTCATGTGG---------ATGTTCAGCGACTGCGACTGGTCAATGAAGGCGCCGCGG 8407 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || |||||||| | | | | | ||| || | |||||| ||||||||| ||| | Sbjct 8406 TCGGCGGCCATCTGAACAACCTGACGCTGCGAAATCTCCCAAACGGTCTTGTAGAGCGCC 8347 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCT 212850 |||| ||| | |||| | ||| ||||| || | || || || | | | || | | Sbjct 8346 TTGATGTCGGCAGGGATGTTGGGAATGTTTTGGATGGATCC---GT-TCTCGGCAATGAT 8291 Query 212851 GCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 || | |||| | ||| ||| || ||| || ||||| ||||| || || Sbjct 8290 GCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACCAGGTCCTTGAGGAGCCACGG 8231 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || | |||||| || || | | || | | |||||| | ||| || ||||| || Sbjct 8230 GTTCACGACCTGGAACTCCCCAGCCAAGACACGGCGCTGGTAGATGTTGGACGTGTATGG 8171 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||| | ||| ||||| || || ||||| | || ||| |||||||||||||| | Sbjct 8170 CTCGAAACACTCATTGTTGCCGAGGATCTGAGAGGTCGAGGCCGTGGGCATGGGAGCAAG 8111 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 || | ||| | | || ||||| ||| | | || | |||| ||||| Sbjct 8110 CAACAAGGAGTTGCGGATACCATGCTCCTTGATTTGCTCCTTCAGATTGTCCCATTCCCA 8051 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 |||| ||| ||| |||||||||||||||||||| | || || || Sbjct 8050 CAGTTCAGA-AGG--------CTTGACGTTCCACATGTCAAACTGGAGAATACC----CT 8004 Query 213149 CACGGGGCTGC----CCTGGTAAGA-GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 | || ||| | ||| ||| ||| || || || ||||||||||| ||||| | Sbjct 8003 C-CGAGGCAGGTGATCCTTCAAAGGTGGAATAAGGACCCTGCTCCTTGGCAAGCTCCATG 7945 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 ||||| || || |||| ||||| ||| || || |||| | |||| | || ||| Sbjct 7944 GACGCAGTCAAGGAGGCGTGGTAGACGGTCTCGAAAATCTGCTTGTTCAACTCACGAGCC 7885 Query 213264 TCTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 || || ||| ||||||| | ||| |||| | || || || ||||| || || Sbjct 7884 TCGGGTGACTCAAAGGGCAGACGGAGAGCGA-GGAAGGCGTCGGCAAGACCCTGAACACC 7826 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || |||||||||||||| | || ||| ||| |||| ||||| || ||||||| || Sbjct 7825 GACACCGATGGGTCTGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGCACGGGGTAATGGT 7767 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || ||||||||||||||| ||||||||| | || | || || | ||| | || Sbjct 7766 TGACGTCGATGATCTTGTTTAGGTTGCGGACCACGACCTGAGTCACGTCATGCAGCTTCT 7707 Query 213442 CGTGATTGAACACGTAGCCCCC--GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 | | | | || |||| | || | ||||| |||| ||||||| || || Sbjct 7706 -GAAAGTCATATCG-AGCCTCGTTGTAGTCAACAAAGGCAGGAAGGGCGAGCGAAGCAAG 7649 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| ||||||||||| | | | | | ||| || || ||||| ||||| || || Sbjct 7648 GTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAGAGATTAGA 7589 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 | || |||||| || ||||||| ||||| ||| |||| || |||||||||||| Sbjct 7588 ACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAG 7529 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 |||| ||||| |||||||| ||| | ||| || | |||||| | | ||| Sbjct 7528 CATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGAGCTTCTGGGC 7469 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGA 213738 || | || | | | | | | | |||||||| |||||| || | | | Sbjct 7468 GCGGATG----GTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGAGCCTCAA 7413 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 | || | || || | | || || || || |||||||||||| |||||| Sbjct 7412 ACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGAGAGTCCAGT 7353 Query 213799 CCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 | |||| | |||| ||| | || |||||| || || |||| |||||| ||| ||| ||| Sbjct 7352 CGCCGTTCTTCTC-GACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGAGGAAAAGG 7294 Query 213858 TCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATG 213917 |||| | | ||| ||| || ||| || || || || || || ||||||| Sbjct 7293 TCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACTCAAAGACA 7234 Query 213918 TCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGG 213974 || |||||||| ||||||| ||||||||||||||| || | || | ||||| |||||| Sbjct 7233 TCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGCCACCCTGG 7174 Query 213975 TCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT 214034 || || |||||| ||||||| | || || | ||| | | || ||||| Sbjct 7173 TCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGAAGTA 7114 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCC 214090 |||||||| || || || || ||||| | ||| | || ||| |||| ||| || Sbjct 7113 CCGTTGGTGCCAGCAATGTATGAGCCAGTGGCAC---GGATGC-GGTGGACGTTGAGGCC 7058 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 ||||| || || |||||||||||||||||| | | | || || |||||| | Sbjct 7057 AATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 6998 Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG-- 214208 ||||||||||| | | || | | ||||||| || |||| |||||||| ||| Sbjct 6997 GATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCT-GGGCCTGG-GGAGTA 6940 Query 214209 CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAG 214268 |||| |||||||| || || ||| ||| | | |||||| | || | ||| |||| Sbjct 6939 CCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAC 6880 Query 214269 GTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATG 214328 || || | ||| |||| || ||| | |||| | ||| | ||| Sbjct 6879 GTTTCAATGACGCGCTCAATGTTGTCGCCCCAGATGCCGACAGCGACACGCATAATCATA 6820 Query 214329 TGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGA 214385 |||||||| | || | || || ||| | ||| || ||||| || ||||||||| Sbjct 6819 TGCTGGGGTCGCTCGACAATCTTGCCGTTGAG---CTTCAGGAGGTACGATCGCTCCAGA 6763 Query 214386 GTCTTGAACCCAAAGTA 214402 |||||||| |||||||| Sbjct 6762 GTCTTGAAGCCAAAGTA 6746 >seq1923 Length=107003 Score = 145 bits (160), Expect = 1e-29 Identities = 342/505 (68%), Gaps = 11/505 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || |||| |||||||||||||| ||||| || ||| |||||||| || Sbjct 7466 CTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGTGAGATGTTTTC 7525 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCA 47957 |||||| |||||||||| || || |||| || | || ||| | |||| | Sbjct 7526 CATGAAATCAAAGGGGTTGGCCGTCTTGTACA-CCTTCTCGTTGCCGAGAGCGACCAGGA 7584 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-G 48016 || | || |||||| | || ||||| | ||| || || ||||||||| | || | Sbjct 7585 GGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCATGCCGAGTAGAG 7644 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||| |||||||||| || || ||||||| ||| || ||||| || | || Sbjct 7645 CACAC-GGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCGTCGGTGATGATG 7703 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGC-GCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || | | || || || | ||| ||||||| | | |||| |||||| Sbjct 7704 TCTTTGATGATCTGCT-TGCTGGCACGGTGCTTCAGGTGC---GAGTGCAGCAGGCAGGC 7759 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||||| || ||||| || |||||| |||| |||||| || || || Sbjct 7760 AAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCCGGG 7819 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | |||| || || ||||| || || | || || | ||| |||||||||||| Sbjct 7820 CATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGATGCC 7879 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGATCC 48314 ||| || || || || ||| | | || |||| | | ||||| |||| |||| Sbjct 7880 CTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTGGATTCCTTGTCCTGA-ATCC 7938 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTT 48339 || || |||||||| |||||||| Sbjct 7939 AGTGAATAGCCCAGTCCGCCTTCTT 7963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509115778560