Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1793 347 2e-90 seq1923 141 2e-28 >seq1793 Length=11804 Score = 347 bits (384), Expect = 2e-90 Identities = 858/1281 (67%), Gaps = 53/1281 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 |||| || |||||||||| |||||| || ||| |||||| | ||| | |||||||| Sbjct 7938 GTCAAGGAGGCGTGGTAGACGGTCTCGAAAATCTGCTTGTTCAA-CTCACGAGCCTCGGG 7880 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||||||| ||| || | ||| ||||||| || ||||| || |||| ||| Sbjct 7879 TGACTCAAAGGGCAGACGGAGAGCGAGGAAGGCGTCGGCAAGACCCTGAACACCGACACC 7820 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||| ||||| | | ||||| | ||| | || ||| |||||| ||| ||||||| Sbjct 7819 GATGGGTCTGTGGCGCATGTTGCTGTTGCGAGC-CTCCTG-CACGGGGTAATGGTTGACG 7762 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| ||||| | | ||| | | ||| || ||||||||| Sbjct 7761 TCGATGATCTTGTTTAGGTTGCGGACCACGACCTGAGTCACGTCATGCAGCTTCTG---- 7706 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 || || ||| ||| |||| | | || ||||| || ||||| | Sbjct 7705 ---AAAGTCATATCGA-GCC-TCGTTGTAG---TCAACAAAGGCAGGAAGGGCGAGCGAA 7654 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| || ||||||||||||||| | || || | || ||||| || ||||| Sbjct 7653 GCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAGAGA 7594 Query 221774 TTGCTGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 || | |||| |||||| || |||| || || || ||| ||| ||| |||| Sbjct 7593 TTA--GAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCCT 7536 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| ||||| ||| ||||| |||||| ||| ||| || |||||| | Sbjct 7535 TGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGAGCT 7476 Query 221892 CTCTGG-CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 ||||| ||| | ||| | |||| | ||| |||| |||||| ||| Sbjct 7475 -TCTGGGCGCGGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTAC------ 7423 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | |||||| ||||| || ||| | ||||| || ||| ||||||| Sbjct 7422 -AGAGCCT--CAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACAC 7366 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 || ||| |||||| ||| | | ||| | || ||||||||| || ||||||||||| Sbjct 7365 ATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGG 7306 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || || || | | || ||||||| ||||| ||| || | || || | Sbjct 7305 GCGAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGG 7246 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| | ||||||||||| |||||||| |||| ||| | || || ||||||||| Sbjct 7245 AACTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTG 7186 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||||||||| || || || || |||||| | || || | || | | Sbjct 7185 TTGCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACG 7126 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 || ||||| |||||||||||| |||||| | || ||| | || | | || Sbjct 7125 CCATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCAC---GGATGC-GGTG 7070 Query 222305 GAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 ||| | ||| || || || || ||| ||||||||||||||| ||||||| ||||| Sbjct 7069 GACGTTGAGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTC 7010 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||||||||| || ||| ||||| | || | || || || || |||| ||| | Sbjct 7009 ATAGATGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGC 6950 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | || | || || || || || || ||| |||||| || ||| | || ||||| Sbjct 6949 CTGGGGAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACAT 6890 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATC 222539 || | |||||| || | ||| | | |||||||| ||| || | | | ||| | Sbjct 6889 GAGGTTGTACGTTTCAATGACGCGCTCAATGTTGTCGCCCCAGATGCCG-ACAGCGACAC 6831 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||| | |||||| | ||| ||| || | ||||| || |||||||| Sbjct 6830 GCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCT--TCAGGAGGTACGA 6773 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | |||||||||||||| |||||||| | | | ||||||||| ||| || | ||| Sbjct 6772 TCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTAGACTATGGC 6713 Query 222658 GGCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 6712 AGAGTCAAGCTCCTCCTTGTG 6692 >seq1923 Length=107003 Score = 141 bits (156), Expect = 2e-28 Identities = 297/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| | || |||||||| ||||| ||||||||||| |||||||| | ||||| ||| Sbjct 7908 AGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCCTCCA 7849 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||| ||||| ||| || ||| |||||||| ||| ||| || ||||| |||||| Sbjct 7848 TCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAACTCATCT 7789 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| |||| || |||||||||||||| || || ||| || | Sbjct 7788 CGCGCGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCG---CACCTGAAGC 7732 Query 26057 ACAAACCTTC--TCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 || | | | |||| ||| | || | ||||||| || || || |||||| Sbjct 7731 AC---CGTGCCAGCAAGCAGATCATCAAAGACATCATCACCGACGCCGTCACCATCGAGC 7675 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| | | ||||||||| | || |||| Sbjct 7674 AGGAGTTCCTGACCGAGGCTTTGCCGTGTGCTCTACTCGGCATGAACGCTACTCTGATGA 7615 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCT 26233 || |||||||| | || || |||| || ||| | || || || | | | Sbjct 7614 AGCAGTACATTGAATTCGTCGCTGACCGCCTCCTGGTCGCTCTCGGCAACGAGAAGGTGT 7555 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| ||| | ||||| || || || ||||||||||| || ||| || |||||||||| Sbjct 7554 ACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCTCACTGGGTGGCAAGACCAACT 7495 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| ||| | |||||||| || || Sbjct 7494 TCTTTGAGAAGCGAGTCGGCGAGTACCA 7467 Score = 93.3 bits (102), Expect = 8e-14 Identities = 178/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||| || | ||| |||||| ||||||||||||||||| Sbjct 8387 ATTTGGCAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAAGAGATTGATCTC 8328 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCA---AAGACGAGCAGCATTTTCTCAAG 25593 | ||||| || ||| ||| | || || | | |||||| | | || || Sbjct 8327 TCAAAGGATCTGCACGATTGGAATAATCGATTGAATGATGACGAGAAATACTTCATCTCT 8268 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | |||| |||||||| |||||||| || || || |||||||| ||| ||| || Sbjct 8267 CACATCCTGGCTTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTGGTAGAGCGA 8208 Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || || || | | || || | || |||||||| || ||||| || Sbjct 8207 TTCAGCGGCGAGGTTCAGGTTCCAGAAGCCCGA-TGCTTCTACGGGTTTCAGATCATGAT 8149 Query 25713 CGAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 8148 GGAGAACATCCACTCTGAG 8130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821184120960