Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1893 111 1e-18
seq1693 102 5e-16
seq188 96.9 2e-14
>seq1893
Length=9943
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| || || || || ||||| || || || || || | || ||||| ||| ||||
Sbjct 1328 ACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATC-GCTCAGAG 1270
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | |||||| | ||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 1269 TGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATAC 1210
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729
||||||| |||||||| || ||||| |||||||||||| || | || |
Sbjct 1209 CTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACCTCCA 1150
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||| || || || || | || || || ||||||||
Sbjct 1149 AGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTG 1110
Score = 102 bits (112), Expect = 5e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 1034 ATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTT 975
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| ||||||||| ||||| |||||||| || | | | || ||||||||
Sbjct 974 ATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAAT 915
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762
|| || || || || ||||| ||||
Sbjct 914 GGTCTTGCCAGTCAGGGTCTTGACGA 889
>seq1693
Length=13545
Score = 102 bits (112), Expect = 5e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || || ||||| || ||||| || || || || ||||||||||| || |||||||
Sbjct 6999 ATGCCGTCATCACTGTGCCTGCATACTTCAACGACTCACAACGTCAAGCCACCAAAGATG 7058
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || || || ||||| || || | ||||| || || ||||| || || |||||
Sbjct 7059 CTGGCCTGATCGCTGGTCTCAACGTGCTGCGTATCATCAACGAACCCACCGCTGCCGCCA 7118
Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGAT 474910
|||| || |||||||| ||||| || ||| |||||| | |||||||||
Sbjct 7119 TTGCCTACGGTCTTGACAAGAAGGTCGAGGGTGAACGCAATGTTCTCATCTTTGAT 7174
>seq188
Length=45544
Score = 96.9 bits (106), Expect = 2e-14
Identities = 101/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCA-AGCAACTAAAGATGCGGGAAGAAT 474804
|| ||||| || || || ||||| |||||||||| |||| | || |||||||| ||
Sbjct 5403 ACCGTTCCTGCCTACTTCAATGACGCTCAACGTCAGAGCACC-AAGGATGCGGGCCAGAT 5461
Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864
|| |||||||||||||| ||| || ||||||| || || || || || ||||| |||||
Sbjct 5462 CGCCGGTCTTAATGTTTTGCGTGTTGTTAATGAGCCTACGGCTGCTGCTCTTGCATATGG 5521
Query 474865 TCTTGATAAG 474874
||| || |||
Sbjct 5522 TCTGGAGAAG 5531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268091951871032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |