Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1893 111 1e-18 seq1693 102 5e-16 seq188 96.9 2e-14 >seq1893 Length=9943 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| || || || || ||||| || || || || || | || ||||| ||| |||| Sbjct 1328 ACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATC-GCTCAGAG 1270 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| | ||||||||||||||||| |||||||| ||||| |||||||| | Sbjct 1269 TGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATAC 1210 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 ||||||| |||||||| || ||||| |||||||||||| || | || | Sbjct 1209 CTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACCTCCA 1150 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || || || | || || || |||||||| Sbjct 1149 AGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTG 1110 Score = 102 bits (112), Expect = 5e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||||||||| ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1034 ATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTT 975 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || ||||||||| ||||| |||||||| || | | | || |||||||| Sbjct 974 ATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAAT 915 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762 || || || || || ||||| |||| Sbjct 914 GGTCTTGCCAGTCAGGGTCTTGACGA 889 >seq1693 Length=13545 Score = 102 bits (112), Expect = 5e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || ||||| || ||||| || || || || ||||||||||| || ||||||| Sbjct 6999 ATGCCGTCATCACTGTGCCTGCATACTTCAACGACTCACAACGTCAAGCCACCAAAGATG 7058 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || || || ||||| || || | ||||| || || ||||| || || ||||| Sbjct 7059 CTGGCCTGATCGCTGGTCTCAACGTGCTGCGTATCATCAACGAACCCACCGCTGCCGCCA 7118 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 |||| || |||||||| ||||| || ||| |||||| | ||||||||| Sbjct 7119 TTGCCTACGGTCTTGACAAGAAGGTCGAGGGTGAACGCAATGTTCTCATCTTTGAT 7174 >seq188 Length=45544 Score = 96.9 bits (106), Expect = 2e-14 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCA-AGCAACTAAAGATGCGGGAAGAAT 474804 || ||||| || || || ||||| |||||||||| |||| | || |||||||| || Sbjct 5403 ACCGTTCCTGCCTACTTCAATGACGCTCAACGTCAGAGCACC-AAGGATGCGGGCCAGAT 5461 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || |||||||||||||| ||| || ||||||| || || || || || ||||| ||||| Sbjct 5462 CGCCGGTCTTAATGTTTTGCGTGTTGTTAATGAGCCTACGGCTGCTGCTCTTGCATATGG 5521 Query 474865 TCTTGATAAG 474874 ||| || ||| Sbjct 5522 TCTGGAGAAG 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268091951871032