Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1793 136 1e-26 seq1923 114 4e-20 seq1430 111 5e-19 >seq1793 Length=11804 Score = 136 bits (150), Expect = 1e-26 Identities = 345/521 (66%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| | |||||| ||| || |||||||| ||||||| |||| ||||||||||| Sbjct 7618 GTATTCGATAATCTCCGTGCAGAGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTT 7559 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || |||| |||||||||||||| || ||| | ||| | || ||||| |||| || Sbjct 7558 GCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGC 7499 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 |||| ||| |||||| | |||| || |||| |||| || Sbjct 7498 TTCCAAAATGGAGTACCAGAGCTTCTGGGCGCGGATGGTCTTGCGACCCTTGCCCTCACG 7439 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | |||||||| || || || || || ||| Sbjct 7438 CTCGTACTTTTCGTACAGAGCCT--CAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGG 7381 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| || ||| || | || | ||| || || || ||||||| ||| || Sbjct 7380 CACTCATTGGGACACATGAGAGTCCAGTCGCCGTTCTTCTCG---ACACGCTTCATGAAG 7324 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | |||| ||| | || ||||||||||| || |||||| | |||||| Sbjct 7323 AGATCAGGGATCCACAGGGCGAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGG 7264 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| ||||| || | ||| || | ||||| || |||||||| || || ||| Sbjct 7263 TTCTTACGTAGGTCGAGGAACTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCA 7204 Query 156045 AAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||| | | ||||||||||| |||||||| | || || || ||||| || Sbjct 7203 AAGGCACCTGGTCGCTTGTTGCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACT 7144 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 | ||||| ||||| | ||||||||||| || ||||| || Sbjct 7143 CGGAGCATGGGAATGACGCCATTGGAAGTACCGTTGGTGCC 7103 >seq1923 Length=107003 Score = 114 bits (126), Expect = 4e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| |||||| ||||| | |||||||||||| | ||||| ||||||||| | | Sbjct 7977 TTCCCTGTATTCGCAAGAAGGCGGACTGGGCTATTCACTGGATTCAGGACAAGGAATCCA 7918 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 | || || || | || || ||||| | || |||||||| || ||||| || || | Sbjct 7917 GCTTCGCCCAGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCT 7858 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 | ||| || |||||||| || ||||| || | | || || ||| || ||||||| Sbjct 7857 TTGCCTCCATCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACG 7798 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||| || || | ||||||| || |||||||| |||||| Sbjct 7797 AACTCATCTCGCGCGACGAGGGTCTGCACACCGACTTTGCC 7757 >seq1430 Length=20950 Score = 111 bits (122), Expect = 5e-19 Identities = 191/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| || ||||| || || || || || |||||||| ||||| | ||| Sbjct 16877 CGTCGCTGAATGTACCCAGTCTCAGCAGTCTTCACCGCAGTATCAATCAGACCTTCCCGA 16818 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711 ||| |||| || |||||||| | ||| || ||| | || | | | || |||| Sbjct 16817 CCAGCCATGGCGTGGAAGAAGAACTCGGTAGG-CGTCAAGCCACGGAGGTATGAATTCTC 16759 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 |||||| ||||| |||||||| || | |||| |||||| ||||| |||||||| | | Sbjct 16758 AACGAAGCCACGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAGTGCGGCAGGGTGCGATA 16699 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 || | || | ||||||||||| || || ||| | || || || | | | |||| Sbjct 16698 CTTGAATCCAAAGGGGATACGCTTGCCTTCGACGATTTGTTGCCCGACCAGAGCAGTCAT 16639 Query 302832 CTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||| || || || | | ||||||||| |||| Sbjct 16638 CTGGGAGATGTTAATGGAAGAGCCCTTGGAACCAG 16604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471779243513458