Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1793 143 3e-28 seq1698 134 2e-25 seq1923 122 1e-21 seq1238 96.9 4e-14 seq643 91.5 2e-12 >seq1793 Length=11804 Score = 143 bits (158), Expect = 3e-28 Identities = 299/447 (67%), Gaps = 15/447 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || | ||||||| ||| || || ||||||||||| | || ||| ||||| Sbjct 7177 CTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGA 7118 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||| | ||| || | ||| || | ||| Sbjct 7117 AGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGAGGCC 7058 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||| ||| |||||||| | ||||| ||||||||||| ||||||||||| Sbjct 7057 AATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 6998 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| ||||| ||||| || || || | || | || || Sbjct 6997 GATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGGAGTACC 6938 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| || || || | || |||||| |||| | |||||| || ||| || Sbjct 6937 AGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTACGT 6878 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | |||||| || | || | | || || ||||| ||||| Sbjct 6877 TTCAATGACGCGC------------TCAATGTTGTC---GCCCCAGATGCCGACAGCGAC 6833 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||| | ||| | |||||| |||||||| | |||| | ||| ||||| || Sbjct 6832 ACGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGA 6773 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511 || || ||| ||| ||||||||| Sbjct 6772 TCGCTCCAGAGTCTTGAAGCCAAAGTA 6746 Score = 107 bits (118), Expect = 2e-17 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1628362 TCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGAC 1628421 ||||| || | || ||||| ||| |||||||| ||| ||||| | ||| | | Sbjct 7416 TCAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGAGAGTC 7357 Query 1628422 CAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAG 1628481 |||||||| || | | || ||| ||||| ||| ||||||| ||| || Sbjct 7356 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGAGGAAA 7297 Query 1628482 AGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACA 1628541 ||||| ||||| || ||||||||||||||||||||| |||||||| | || | Sbjct 7296 AGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACTCAAAG 7237 Query 1628542 ATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | || |||||||| |||||||||||| ||||||||| || |||||| ||| || Sbjct 7236 ACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGCCACC 7178 Score = 93.3 bits (102), Expect = 5e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 ||||||| || ||||| || ||||| || || || | |||||||| ||| || ||| | Sbjct 7847 CGTCGGCAAGACCCTGAACACCGACACCGATGGGTCTGTGGCGCATGTTGCTGTTGCGAG 7788 Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987 |||| |||| ||||| ||||||| |||||| | ||| ||||||| |||||||||| Sbjct 7787 CCTCCTGCACGGGGTAATGGTTGACGTCGATGATCTTGTTTAGGTTGCGGACCACGACCT 7728 Query 1627988 G 1627988 | Sbjct 7727 G 7727 >seq1698 Length=13469 Score = 134 bits (148), Expect = 2e-25 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| ||||||||||| |||||||||||| | || |||||| |||| || || Sbjct 10418 GCCGCCAACTATCTCGACATCAAACCTCTGCTCGATGTCGGCTGCAAGACTGTTGCTAAT 10477 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| || ||||| ||||||||||||||||| || ||||||| Sbjct 10478 ATGATCAAGGGTAAATCGCCTGAGGAGATCCGCAAGACGTTCAACATCA 10526 >seq1923 Length=107003 Score = 122 bits (134), Expect = 1e-21 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| ||| || |||||||||||||| | || ||||| Sbjct 7461 GCCTTCTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGTGAGATG 7520 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||| | || ||||||| ||||||||| ||| ||| ||||| | | Sbjct 7521 TTTTCCATGAAATCAAAGGGGTTGGCCGTCTTGTACACCTTCTCGTTGCCGAGAGCGACC 7580 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||| ||||| || || |||||||| ||| || ||||||||||||| Sbjct 7581 AGGAGGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCATGCCGAGT 7640 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| ||| ||||| | |||||| |||||| ||| |||| Sbjct 7641 AGAGCACACGGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCGTCGGTGATG 7700 Query 868931 AT 868932 || Sbjct 7701 AT 7702 Score = 105 bits (116), Expect = 8e-17 Identities = 161/224 (72%), Gaps = 13/224 (6%) Strand=Plus/Plus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| |||||||| ||| | |||||| Sbjct 7750 GCAGGCA-GGCAAAGTCGG---TGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAG 7805 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||||||||| | ||| |||||||| ||||||||||||| | || ||| Sbjct 7806 AAGGTCAGGCCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCG 7865 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||| ||||||||||| || ||||||||| ||| | |||| ||| ||| || || Sbjct 7866 CTGAAGAAGATGCCCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTG--GA-- 7921 Query 869330 CCCTCCTTGT--TG-ATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 ||||||| || ||||| | || |||||||| ||||| || Sbjct 7922 --TTCCTTGTCCTGAATCCAGTGAATAGCCCAGTCCGCCTTCTT 7963 >seq1238 Length=28852 Score = 96.9 bits (106), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 19041 CAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTC 19100 ||| | ||||||| ||||||||| || || ||| | ||||||| || | || || Sbjct 9292 CAAAATGACAGCACCGGCGGCACAGTAACATGCATCGTACGCAACGCACCTTCTGGTCTG 9233 Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160 || |||||| ||||||||| |||||||| |||| ||| ||||||||||| || || Sbjct 9232 GGTGAGCCGGCGTTTGACAAGCTCGAGGCCCTCCTCGGCCATGCCATGCTGTCCATACCC 9173 Query 19161 GCCACCAAGGGATTCGAGATTGG 19183 || |||||| ||||| ||||| Sbjct 9172 GCGGTCAAGGGCTTCGAAATTGG 9150 >seq643 Length=40369 Score = 91.5 bits (100), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1574059 TGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGG 1574118 |||| |||||| | |||||| | |||||||||||||||||||| || | || || | | Sbjct 35234 TGCCCCCCGGAAGACACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCTGGCG 35175 Query 1574119 CCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGG 1574178 | || || || || || |||||||||| || | ||||| |||||||||||| | | Sbjct 35174 CACAACAAGCTCTTCGTCGAACCATGGAAATTTACTCAAACACCACGCGCTTTGCCTTTG 35115 Query 1574179 CGTGCAAC 1574186 | |||||| Sbjct 35114 CATGCAAC 35107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106972280434778