Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1793 143 3e-28
seq1698 134 2e-25
seq1923 122 1e-21
seq1238 96.9 4e-14
seq643 91.5 2e-12
>seq1793
Length=11804
Score = 143 bits (158), Expect = 3e-28
Identities = 299/447 (67%), Gaps = 15/447 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || | ||||||| ||| || || ||||||||||| | || ||| |||||
Sbjct 7177 CTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGA 7118
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||| | ||| | ||| || | ||| || | |||
Sbjct 7117 AGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGAGGCC 7058
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||||| ||| |||||||| | ||||| ||||||||||| |||||||||||
Sbjct 7057 AATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 6998
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| ||||| ||||| || || || | || | || ||
Sbjct 6997 GATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGGAGTACC 6938
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| ||||| || || || | || |||||| |||| | |||||| || ||| ||
Sbjct 6937 AGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTACGT 6878
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| | |||||| || | || | | || || ||||| |||||
Sbjct 6877 TTCAATGACGCGC------------TCAATGTTGTC---GCCCCAGATGCCGACAGCGAC 6833
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||| | ||| | |||||| |||||||| | |||| | ||| ||||| ||
Sbjct 6832 ACGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGA 6773
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511
|| || ||| ||| |||||||||
Sbjct 6772 TCGCTCCAGAGTCTTGAAGCCAAAGTA 6746
Score = 107 bits (118), Expect = 2e-17
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 1628362 TCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGAC 1628421
||||| || | || ||||| ||| |||||||| ||| ||||| | ||| | |
Sbjct 7416 TCAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGAGAGTC 7357
Query 1628422 CAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAG 1628481
|||||||| || | | || ||| ||||| ||| ||||||| ||| ||
Sbjct 7356 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGAGGAAA 7297
Query 1628482 AGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACA 1628541
||||| ||||| || ||||||||||||||||||||| |||||||| | || |
Sbjct 7296 AGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACTCAAAG 7237
Query 1628542 ATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
| || |||||||| |||||||||||| ||||||||| || |||||| ||| ||
Sbjct 7236 ACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGCCACC 7178
Score = 93.3 bits (102), Expect = 5e-13
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927
||||||| || ||||| || ||||| || || || | |||||||| ||| || ||| |
Sbjct 7847 CGTCGGCAAGACCCTGAACACCGACACCGATGGGTCTGTGGCGCATGTTGCTGTTGCGAG 7788
Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987
|||| |||| ||||| ||||||| |||||| | ||| ||||||| ||||||||||
Sbjct 7787 CCTCCTGCACGGGGTAATGGTTGACGTCGATGATCTTGTTTAGGTTGCGGACCACGACCT 7728
Query 1627988 G 1627988
|
Sbjct 7727 G 7727
>seq1698
Length=13469
Score = 134 bits (148), Expect = 2e-25
Identities = 95/109 (87%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||||||||||| ||||||||||| |||||||||||| | || |||||| |||| || ||
Sbjct 10418 GCCGCCAACTATCTCGACATCAAACCTCTGCTCGATGTCGGCTGCAAGACTGTTGCTAAT 10477
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||| || ||||| ||||||||||||||||| || |||||||
Sbjct 10478 ATGATCAAGGGTAAATCGCCTGAGGAGATCCGCAAGACGTTCAACATCA 10526
>seq1923
Length=107003
Score = 122 bits (134), Expect = 1e-21
Identities = 172/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || ||| ||| || |||||||||||||| | || |||||
Sbjct 7461 GCCTTCTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGTGAGATG 7520
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
||||| | || ||||||| ||||||||| ||| ||| ||||| | |
Sbjct 7521 TTTTCCATGAAATCAAAGGGGTTGGCCGTCTTGTACACCTTCTCGTTGCCGAGAGCGACC 7580
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| |||||||| ||||| || || |||||||| ||| || |||||||||||||
Sbjct 7581 AGGAGGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCATGCCGAGT 7640
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | |||| ||| ||||| | |||||| |||||| ||| ||||
Sbjct 7641 AGAGCACACGGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCGTCGGTGATG 7700
Query 868931 AT 868932
||
Sbjct 7701 AT 7702
Score = 105 bits (116), Expect = 8e-17
Identities = 161/224 (72%), Gaps = 13/224 (6%)
Strand=Plus/Plus
Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209
||||| | ||||||| || | ||| ||| |||||||| ||| | ||||||
Sbjct 7750 GCAGGCA-GGCAAAGTCGG---TGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAG 7805
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| ||||||||||| | ||| |||||||| ||||||||||||| | || |||
Sbjct 7806 AAGGTCAGGCCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCG 7865
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
||| ||||||||||| || ||||||||| ||| | |||| ||| ||| || ||
Sbjct 7866 CTGAAGAAGATGCCCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTG--GA-- 7921
Query 869330 CCCTCCTTGT--TG-ATCCACTTCATCGCCCAGTCGGCCTTTTT 869370
||||||| || ||||| | || |||||||| ||||| ||
Sbjct 7922 --TTCCTTGTCCTGAATCCAGTGAATAGCCCAGTCCGCCTTCTT 7963
>seq1238
Length=28852
Score = 96.9 bits (106), Expect = 4e-14
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 19041 CAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTC 19100
||| | ||||||| ||||||||| || || ||| | ||||||| || | || ||
Sbjct 9292 CAAAATGACAGCACCGGCGGCACAGTAACATGCATCGTACGCAACGCACCTTCTGGTCTG 9233
Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160
|| |||||| ||||||||| |||||||| |||| ||| ||||||||||| || ||
Sbjct 9232 GGTGAGCCGGCGTTTGACAAGCTCGAGGCCCTCCTCGGCCATGCCATGCTGTCCATACCC 9173
Query 19161 GCCACCAAGGGATTCGAGATTGG 19183
|| |||||| ||||| |||||
Sbjct 9172 GCGGTCAAGGGCTTCGAAATTGG 9150
>seq643
Length=40369
Score = 91.5 bits (100), Expect = 2e-12
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 1574059 TGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGG 1574118
|||| |||||| | |||||| | |||||||||||||||||||| || | || || | |
Sbjct 35234 TGCCCCCCGGAAGACACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCTGGCG 35175
Query 1574119 CCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGG 1574178
| || || || || || |||||||||| || | ||||| |||||||||||| | |
Sbjct 35174 CACAACAAGCTCTTCGTCGAACCATGGAAATTTACTCAAACACCACGCGCTTTGCCTTTG 35115
Query 1574179 CGTGCAAC 1574186
| ||||||
Sbjct 35114 CATGCAAC 35107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106972280434778
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |