Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1923 140 5e-27 seq1793 129 9e-24 seq1698 111 2e-18 seq1294 91.5 2e-12 >seq1923 Length=107003 Score = 140 bits (154), Expect = 5e-27 Identities = 183/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||||| || ||| ||| || |||||||||||||| | | Sbjct 7453 TGACACCGGCCTTCTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCA 7512 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| ||||| | || |||||||||||| ||| ||||||| |||| Sbjct 7513 GTGAGATGTTTTCCATGAAATCAAAGGGGTTGGCCGTCTTGTACACCTTCTCGTTGCCGA 7572 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || |||||||| |||||||||||||||||||| ||| || | ||||||| Sbjct 7573 GAGCGACCAGGAGGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCA 7632 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || || ||| |||| | |||| | | ||||| | |||||| |||||| Sbjct 7633 TGCCGAGTAGAGCACAC-GGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCG 7691 Query 794130 TCGATGATGAT 794140 ||| ||||||| Sbjct 7692 TCGGTGATGAT 7702 Score = 87.8 bits (96), Expect = 3e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||| ||| ||||||||||| | ||| ||||| Sbjct 7775 ACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCCGGGCATCAAGCCCCGCTT 7834 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||||||||||| || ||| ||| ||||||||||| || |||||||| Sbjct 7835 CTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGATGCCCTCAACAGCGGCAAA 7894 Query 794460 GCCGACGAGCCGCTCGGCAAA 794480 | |||| | |||| ||| || Sbjct 7895 GGCGACTAATCGCTGGGCGAA 7915 >seq1793 Length=11804 Score = 129 bits (142), Expect = 9e-24 Identities = 329/501 (66%), Gaps = 15/501 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| | ||||||| ||| || || ||||||||||| | | ||| ||||| Sbjct 7177 CTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGA 7118 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||| | ||| || | ||| || | ||| Sbjct 7117 AGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGAGGCC 7058 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||||| ||| |||||||| | ||||| | || ||||| || ||||||||||| Sbjct 7057 AATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 6998 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || | | | || || Sbjct 6997 GATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGGAGTACC 6938 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 |||||||| || || || | || ||| | ||| ||||||| | ||| || Sbjct 6937 AGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTACGT 6878 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | |||||| | | | || |||| || || ||||| ||||| Sbjct 6877 TTCAATGACGCGCTCAA-----TGTT----GTCG------CCCCAGATGCCGACAGCGAC 6833 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||| ||||| | ||||||||||||||| | | || | ||| ||||| || Sbjct 6832 ACGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGA 6773 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || ||| ||| | |||||||||| ||| | ||| | |||| | ||||| Sbjct 6772 TCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTAGACTATGGC 6713 Query 2074020 GGCGTCGAGGGCCTCCTTGTG 2074040 | ||| || |||||||||| Sbjct 6712 AGAGTCAAGCTCCTCCTTGTG 6692 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 2071768 AGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAG 2071827 || || ||||| | | || | ||| ||| |||||||| ||| || || | | Sbjct 7422 AGAGCCTCAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATG 7363 Query 2071828 AGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCG 2071887 || | |||||||||| || | || || ||| || || || |||||||| || Sbjct 7362 AGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCG 7303 Query 2071888 TAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAG 2071947 || || || ||||| || ||||||||||||||||||||| |||||||| | Sbjct 7302 AGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAAC 7243 Query 2071948 TCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCG 2072007 || | || || |||||||| |||||||||||| ||||||||| || |||||| | Sbjct 7242 TCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTG 7183 Query 2072008 CCGCC 2072012 || || Sbjct 7182 CCACC 7178 >seq1698 Length=13469 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||||||||| ||||||||||| || || |||||| | || |||||||| || || || Sbjct 10418 GCCGCCAACTATCTCGACATCAAACCTCTGCTCGATGTCGGCTGCAAGACTGTTGCTAAT 10477 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||| || ||||| ||||| ||||||||||| || ||||||| Sbjct 10478 ATGATCAAGGGTAAATCGCCTGAGGAGATCCGCAAGACGTTCAACATCA 10526 >seq1294 Length=25696 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| |||||||| ||| |||| ||||| ||| ||| Sbjct 23187 GTACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCGAGTTCACCGGGCAG 23246 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 |||||||| || | || || ||||| |||| | ||| ||| Sbjct 23247 AATCAGGCGAACAGATGTTTGAATCTCACGGGAGGAGATGGTG 23289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916030034142926