Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1923 140 5e-27
seq1793 129 9e-24
seq1698 111 2e-18
seq1294 91.5 2e-12
>seq1923
Length=107003
Score = 140 bits (154), Expect = 5e-27
Identities = 183/251 (73%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| |||||||| || ||| ||| || |||||||||||||| | |
Sbjct 7453 TGACACCGGCCTTCTGGTACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCA 7512
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| ||||| | || |||||||||||| ||| ||||||| ||||
Sbjct 7513 GTGAGATGTTTTCCATGAAATCAAAGGGGTTGGCCGTCTTGTACACCTTCTCGTTGCCGA 7572
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | || |||||||| |||||||||||||||||||| ||| || | |||||||
Sbjct 7573 GAGCGACCAGGAGGCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCA 7632
Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
|||||| || || ||| |||| | |||| | | ||||| | |||||| ||||||
Sbjct 7633 TGCCGAGTAGAGCACAC-GGCAAAGCCTCGGTCAGGAACTCCTGCTCGATGGTGACGGCG 7691
Query 794130 TCGATGATGAT 794140
||| |||||||
Sbjct 7692 TCGGTGATGAT 7702
Score = 87.8 bits (96), Expect = 3e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| |||||||| ||| | |||||| ||| ||||||||||| | ||| |||||
Sbjct 7775 ACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCCGGGCATCAAGCCCCGCTT 7834
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||| ||||||||||||| || ||| ||| ||||||||||| || ||||||||
Sbjct 7835 CTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGATGCCCTCAACAGCGGCAAA 7894
Query 794460 GCCGACGAGCCGCTCGGCAAA 794480
| |||| | |||| ||| ||
Sbjct 7895 GGCGACTAATCGCTGGGCGAA 7915
>seq1793
Length=11804
Score = 129 bits (142), Expect = 9e-24
Identities = 329/501 (66%), Gaps = 15/501 (3%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| ||||| | ||||||| ||| || || ||||||||||| | | ||| |||||
Sbjct 7177 CTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGA 7118
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||| | ||| | ||| || | ||| || | |||
Sbjct 7117 AGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGAGGCC 7058
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|||||||| ||| |||||||| | ||||| | || ||||| || |||||||||||
Sbjct 7057 AATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 6998
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| || || || | | | || ||
Sbjct 6997 GATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGGAGTACC 6938
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|||||||| || || || | || ||| | ||| ||||||| | ||| ||
Sbjct 6937 AGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTACGT 6878
Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899
| | |||||| | | | || |||| || || ||||| |||||
Sbjct 6877 TTCAATGACGCGCTCAA-----TGTT----GTCG------CCCCAGATGCCGACAGCGAC 6833
Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959
||||| ||||| | ||||||||||||||| | | || | ||| ||||| ||
Sbjct 6832 ACGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGA 6773
Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019
|| ||| ||| | |||||||||| ||| | ||| | |||| | |||||
Sbjct 6772 TCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTAGACTATGGC 6713
Query 2074020 GGCGTCGAGGGCCTCCTTGTG 2074040
| ||| || ||||||||||
Sbjct 6712 AGAGTCAAGCTCCTCCTTGTG 6692
Score = 95.1 bits (104), Expect = 2e-13
Identities = 168/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 2071768 AGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAG 2071827
|| || ||||| | | || | ||| ||| |||||||| ||| || || | |
Sbjct 7422 AGAGCCTCAAACTCCTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATG 7363
Query 2071828 AGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCG 2071887
|| | |||||||||| || | || || ||| || || || |||||||| ||
Sbjct 7362 AGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCG 7303
Query 2071888 TAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAG 2071947
|| || || ||||| || ||||||||||||||||||||| |||||||| |
Sbjct 7302 AGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAAC 7243
Query 2071948 TCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCG 2072007
|| | || || |||||||| |||||||||||| ||||||||| || |||||| |
Sbjct 7242 TCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTG 7183
Query 2072008 CCGCC 2072012
|| ||
Sbjct 7182 CCACC 7178
>seq1698
Length=13469
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||||||||||| ||||||||||| || || |||||| | || |||||||| || || ||
Sbjct 10418 GCCGCCAACTATCTCGACATCAAACCTCTGCTCGATGTCGGCTGCAAGACTGTTGCTAAT 10477
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||| || ||||| ||||| ||||||||||| || |||||||
Sbjct 10478 ATGATCAAGGGTAAATCGCCTGAGGAGATCCGCAAGACGTTCAACATCA 10526
>seq1294
Length=25696
Score = 91.5 bits (100), Expect = 2e-12
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||| ||||| |||||||| ||| |||| ||||| ||| |||
Sbjct 23187 GTACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCGAGTTCACCGGGCAG 23246
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573
|||||||| || | || || ||||| |||| | ||| |||
Sbjct 23247 AATCAGGCGAACAGATGTTTGAATCTCACGGGAGGAGATGGTG 23289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916030034142926
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |