Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1893 122 6e-23 seq1745 105 4e-18 seq1479 98.7 6e-16 >seq1893 Length=9943 Score = 122 bits (134), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || | || |||| || |||||||| || ||||| Sbjct 766 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAA 707 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||||||| |||||||| | || | ||||||||||| | || ||| ||||| || Sbjct 706 ATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTGAC--AT 649 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | ||||| || | |||||| |||| ||| |||||||| || ||||| ||||| Sbjct 648 --TGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTT 591 Query 34963 TACAAAGATCTGCATGAT 34980 || || ||||||||||| Sbjct 590 CACGAAAATCTGCATGAT 573 Score = 111 bits (122), Expect = 1e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || ||| ||||| |||| || |||||||| || ||||| Sbjct 1069 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAA 1010 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| ||||||||||| | || | ||| ||||| || | || ||| |||||| Sbjct 1009 ATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTG 950 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || ||| || || | ||| |||||||| || || |||||||| || Sbjct 949 TCAATAGTGTCGGAGGACTCAACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 34742 CAATCATTTCC-TCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||||| || ||| | || | || || || || | ||||||||||||||| ||||| Sbjct 1343 CAATCATTGCCCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTT 1284 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 || || || |||| |||| |||| |||||||| || || || || |||||||| Sbjct 1283 GTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTG 1224 Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATT 34920 || | || | || ||||| || | ||||| |||||| | || | ||| | Sbjct 1223 ATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACT 1164 Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || | ||| || ||||| || || | ||| || ||||| || |||||| Sbjct 1163 GGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCATG 1106 >seq1745 Length=53961 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||||||||| ||||| ||| |||| |||| Sbjct 17018 CAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCATC 17077 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || || || ||||| ||||| ||||| || | || | || |||||||| Sbjct 17078 CTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTGTC 17137 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | || | || | ||| || || | ||| || || Sbjct 17138 CTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGT 17197 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| ||||| || || ||||||||||| Sbjct 17198 CTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1479 Length=130260 Score = 98.7 bits (108), Expect = 6e-16 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || || || ||||| || ||| | || |||| || |||||||| |||||||| | Sbjct 49445 CCTTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAA 49504 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | ||||| ||||| || Sbjct 49505 TCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGAC--AT- 49561 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| ||| || |||||| || | ||| ||||| || ||||| || ||||| Sbjct 49562 -TGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTC 49620 Query 34964 ACAAA 34968 || || Sbjct 49621 ACGAA 49625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684726279046