Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1893 114 1e-20 seq1745 114 1e-20 >seq1893 Length=9943 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||||||| || ||||| ||||||||||| || || | | |||||| Sbjct 1094 ACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCC 1035 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| |||||||| | |||| | |||||| ||||| || || || || || Sbjct 1034 ATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTT 975 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| |||| ||||| | || | |||||| || || || || || || | Sbjct 974 ATCCTG-AATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAA 916 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAAC 29774 | || |||||||| | ||| || || Sbjct 915 TGGTCTTGCCAGTCAGGGTCTTGAC 891 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611 ||| ||| ||||| | || || || || | ||| || ||| || || || ||||| | Sbjct 1341 ATCATTGCCCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGT 1282 Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671 |||| | |||||| ||| || | || || |||||| | || | | |||||||| Sbjct 1281 AATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGAT 1222 Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAA 29730 |||| |||||||| || || ||||| |||||| | ||||| | || | ||| ||| Sbjct 1221 CCGGAGGAATACCTTCCTTATCTTG-AATTTTAGACTTGACGTTGTCAATAGTATCACTG 1163 Query 29731 AGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || | || || || ||||| || |||||||| ||||| || ||||| Sbjct 1162 GATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 >seq1745 Length=53961 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||||||||||| || || ||| || || |||||||| || || Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| ||||| |||||||||||| | || | || ||||||||||| || Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||| || ||| || | |||||| | || | ||||| ||| || | Sbjct 17123 GATTCCTTCCTTGTCCTG-AATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 17181 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || || || || || || | |||||| || || |||||||| || Sbjct 17182 CCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385209650656794