Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1893 114 1e-20
seq1745 114 1e-20
>seq1893
Length=9943
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| |||||||||||| || ||||| ||||||||||| || || | | ||||||
Sbjct 1094 ACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCC 1035
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| |||||||| | |||| | |||||| ||||| || || || || ||
Sbjct 1034 ATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTT 975
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| |||| ||||| | || | |||||| || || || || || || |
Sbjct 974 ATCCTG-AATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAA 916
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAAC 29774
| || |||||||| | ||| || ||
Sbjct 915 TGGTCTTGCCAGTCAGGGTCTTGAC 891
Score = 98.7 bits (108), Expect = 8e-16
Identities = 165/236 (70%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611
||| ||| ||||| | || || || || | ||| || ||| || || || ||||| |
Sbjct 1341 ATCATTGCCCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGT 1282
Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671
|||| | |||||| ||| || | || || |||||| | || | | ||||||||
Sbjct 1281 AATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGAT 1222
Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAA 29730
|||| |||||||| || || ||||| |||||| | ||||| | || | ||| |||
Sbjct 1221 CCGGAGGAATACCTTCCTTATCTTG-AATTTTAGACTTGACGTTGTCAATAGTATCACTG 1163
Query 29731 AGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || | || || || ||||| || |||||||| ||||| || |||||
Sbjct 1162 GATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107
>seq1745
Length=53961
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || | || ||||||||||| || || ||| || || |||||||| || ||
Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| |||||| ||| ||||| |||||||||||| | || | || ||||||||||| ||
Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|| || || ||||| || ||| || | |||||| | || | ||||| ||| || |
Sbjct 17123 GATTCCTTCCTTGTCCTG-AATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 17181
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || || || || || || | |||||| || || |||||||| ||
Sbjct 17182 CCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385209650656794
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |