Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1893 149 1e-30 seq1745 109 1e-18 >seq1893 Length=9943 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || || ||||| | ||||| || || ||||| || || ||||| Sbjct 1333 CCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTC 1274 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| ||||| | || ||||||||||| || || | ||| ||||| ||||| Sbjct 1273 AGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGA 1214 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||||||||| || | || || || ||||| |||||| | | ||| || Sbjct 1213 ATACCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACC 1154 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||||||||| || || ||||| || ||||| Sbjct 1153 TCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | ||||| || || || || || ||||| || || || || || || || Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| ||||| || ||||| || || || | ||| || || ||||| Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| |||||||||| || || || ||||| || || | || || Sbjct 985 ATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACC 926 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || | || || |||||||| |||| ||||| || Sbjct 925 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 >seq1745 Length=53961 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||| || || || ||||| || || || || || | | || Sbjct 17016 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCA 17075 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| ||||||||||| |||| || ||||| || || ||||||||||| Sbjct 17076 TCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTG 17135 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| | || ||||| ||||| || || || || || || | || ||| Sbjct 17136 TCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 17195 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| || || || || |||||||| Sbjct 17196 GTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981801612969526