Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1793 141 1e-27 seq1923 129 8e-24 >seq1793 Length=11804 Score = 141 bits (156), Expect = 1e-27 Identities = 338/506 (67%), Gaps = 25/506 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| ||||||| | ||| | ||||||| ||| ||||||| Sbjct 6692 CACAAGGAGGAGCTTGACTCTGCCATAGTCTACGACAGAGACTTCAATTACCAGTACTTT 6751 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGC----GCGATATTGTCGTCGA 259797 || | ||| || || || ||||| | ||| | || | ||||||| | Sbjct 6752 GGCTTCAAGACTCTGGAGCGATCGTACCTC-CTGAAGCTCAACGGCAAGATTGTCG---A 6807 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 ||| |||||| ||||| | ||||||||||| | ||| | |||| ||| Sbjct 6808 GCGACCCCAGCATATGATTATGCGTGTCGCTGTCGGCA--TCTGGGG----------CGA 6855 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916 ||| | |||| ||| | | || ||| | |||||| ||||| ||| |||||| Sbjct 6856 CAACA---TTGAGCGCGTCATTGAAACGTACAACCTCATGTC-CAGCAAGTTCTTCACCC 6911 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976 || | || || || || ||||| || || || | | ||| || || ||||| | Sbjct 6912 ACGCCTCTCCGACCCTTTTCAATGCTGGTACTCCCCAGGCCCAGCTGTCATCCTGCTTCC 6971 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 | | |||||||||| || ||||||||||||||||||||||||||| ||||| Sbjct 6972 TCGTCGACATGAAGGATGACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCA 7031 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | |||||||| ||| |||||||| || | || ||| | || ||| | ||| Sbjct 7032 TGATCTCCAAAATGGCTGGCGGCATTGGCCTCAACGTCCACCGCATCCGTGCCACTGGCT 7091 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 | ||| | || ||||||||||| ||||| ||| | | |||||||| || || || | Sbjct 7092 CATACATTGCTGGCACCAACGGTACTTCCAATGGCGTCATTCCCATGCTCCGAGTGTTCA 7151 Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182 || ||||||| | || || |||||| Sbjct 7152 ACAACACGGCCAGATATGTAGACCAG 7177 Score = 109 bits (120), Expect = 8e-18 Identities = 331/505 (66%), Gaps = 16/505 (3%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 ||||||| | |||||||| ||| | | || | ||||||||||||| |||| || |||| Sbjct 8085 AGCATGGTATCCGCAACTCCTTGTTGCTTGCTCCCATGCCCACGGCCTCGACCTCTCAGA 8144 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTG 263031 |||| ||||||| ||| ||||| | ||| |||| |||||||||| |||||| || Sbjct 8145 TCCTCGGCAACAATGAGTGTTTCGA-GCCATACACGTCCAACATCTACCAGCGCCGTGTC 8203 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091 | | || || || || || |||| || ||||| | |||| | || Sbjct 8204 TTGGCTGGGGAGTTCCAGGTCGTGAACCCGTGGCTCCTCAAGGACCTGGTCGACATGGGT 8263 Query 263092 CTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTT 263151 |||||| | | | | |||| ||||||| | | || || | || | || Sbjct 8264 CTGTGGTCCGATGCCATGAAGAACCGCATCATTGCCGAGAACGGATCCATCCAAAACATT 8323 Query 263152 GACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCC 263211 | || | || |||| ||||||| |||| ||||||||| |||||| | | Sbjct 8324 CCCAAC------ATCCCTGCCGACATCAAGGCGCTCTACAAGACCGTTTGGGAGATTTCG 8377 Query 263212 AACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCG 263271 | || | || | ||||| |||||||||| ||| | |||||| |||||| Sbjct 8378 CAGCGTCAGGTTGTTCAGATGGCCGCCGACCGCGGCGCCTTCATTGACCAGTCGCAGTCG 8437 Query 263272 CTCAACCTGTACCTCGCCGACCCGACGGCCGAGAGCATCACGTCGATGCAC---GCCTAT 263328 || ||| | || | ||||| ||| | | ||||| ||||||||| ||| Sbjct 8438 CTGAACATCCACATGAAAGACCCCACGATGGGCAAAATCACCTCGATGCACTTTGCC--- 8494 Query 263329 GCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAAC 263388 | ||| | || |||||||| ||||||||||| ||||||| | | | || ||| | Sbjct 8495 GGCTGGAAGCTGGGTCTCAAGACGGGCATGTACTACTTGCGCACGCAGGCTGCCGCC-GC 8553 Query 263389 GCC-ATTCAATTCACCGTCGATCAG 263412 ||| || || ||||||||||| ||| Sbjct 8554 GCCGATCCAGTTCACCGTCGACCAG 8578 >seq1923 Length=107003 Score = 129 bits (142), Expect = 8e-24 Identities = 187/259 (72%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| |||||| | ||||| | | |||| | ||||| || Sbjct 7702 ATCATCACCGACGCCGTCACCATCGAGCAGGAGTTCCTGACCGAGGCTTTGCCGTGTGCT 7643 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||||| | | || ||| |||||||||||| || ||||| ||||||| Sbjct 7642 CTACTCGGCATGAACGCTA-CTCTGATGAAGCAGTACATTGAA-TTCGTCGCTGACCGCC 7585 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || |||||| | |||||| ||| |||||||||||| || | ||| Sbjct 7584 TCCTGGTCGCTCTCGGCAAC-GAGAAGGTGTACAAGACGGCCAACCCCTTTGATTTCATG 7526 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 || ||||| || | |||||||||||||| || ||| || || ||||||||| Sbjct 7525 GAAAACATCTCACTGGGTGGCAAGACCAACTTCTTTGAGAAGCGAGTCGGCGAGTACCAG 7466 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 |||||||| |||| |||| Sbjct 7465 AAGGCCGGTGTCATGGCCA 7447 Score = 129 bits (142), Expect = 8e-24 Identities = 209/296 (71%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| | |||| ||||||||||||| ||||| ||||| ||| | || | Sbjct 8388 GATTTGGCAAATGTACAAGAAAG-CCGAGGCCTCCTTCTGGACAGCCGAAGAGATTGATC 8330 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTG--TCGCT-GAGCGACGACGAGCGCCATTTCATCA 1455891 || || | | | ||| ||| | || || |||||| | |||||| Sbjct 8329 TCTCAAAGGATCTGCACGATTGGAATAATCGATTGAATGATGACGAGAAATACTTCATCT 8270 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| || || ||| |||||| || |||||||| ||||||||||| | Sbjct 8269 CTCACATCCTGGCTTTCTTT-GCCGCCTCTGACGGCATCGTCAACGAGAACCTGGTAGAG 8211 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | ||||| || || | || |||||||| |||||| Sbjct 8210 CGATTCAGCGGCGAGGTTCAGGTTCCAGAAGCCCGATGCTTCTACGGGTTTCAGATCATG 8151 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || |||||||||||||| || |||||| | ||||||||||| ||| ||||||| Sbjct 8150 ATGGAGAACATCCACTCTGAGACATACTCGTTGCTGATCGACACATACATCAAGGA 8095 Score = 86.0 bits (94), Expect = 9e-11 Identities = 139/193 (72%), Gaps = 14/193 (7%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGAT-CA--ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| |||||||| || | ||||| || ||||||| || | ||| ||| Sbjct 7963 AAGAAGGCGGACTGGGCTATTCACTGGATTCAGGACAAGGAA----TCCAG-CTTCGCCC 7909 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 |||| | |||| ||||||||| || ||||||||||| ||| ||| || | ||| Sbjct 7908 AGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCCTCCA 7849 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT--TCTGCTTTAGCAACGAATTTA 1456296 |||||||||| |||||||| ||| | |||||||| || || || | |||||| | | Sbjct 7848 TCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCT---AACGAACTCA 7792 Query 1456297 TCAGTCGCGACGA 1456309 || |||||||| Sbjct 7791 TCTCGCGCGACGA 7779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177615016961508