Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1745 145 8e-30 seq1893 134 1e-26 seq1793 105 7e-18 seq1479 98.7 1e-15 >seq1745 Length=53961 Score = 145 bits (160), Expect = 8e-30 Identities = 176/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 134479 TTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGT 134538 |||||| || || | ||||||| ||| | ||| || ||| ||||| |||||||||| Sbjct 16998 TTGCCT--CCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGT 17055 Query 134539 AGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGAT 134598 |||||| | |||| | || |||||||||||||| ||||| || | |||||||||| Sbjct 17056 AGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGAT 17115 Query 134599 CGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACG 134658 | || || || ||||| || || ||||| || ||||| ||| | |||||||| | Sbjct 17116 CCGGGGGGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAG 17175 Query 134659 ATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||| ||||| || || || || || || | ||||| ||||| || ||||| ||| Sbjct 17176 ACTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTTG 17234 >seq1893 Length=9943 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| |||||||| | || || || |||||||||||||||||||||||| Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || || || ||||| || ||||||| ||| ||||| || || || Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| ||| ||||| ||| | |||||||| || || || Sbjct 985 ATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACC 926 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| |||||||| || || || | || || |||| Sbjct 925 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGA 889 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || ||||| |||||||| || |||||||||||| | || | Sbjct 793 AGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 734 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| || ||||| || ||||||| |||||||| || || || ||||| || Sbjct 733 CCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCC 674 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| ||| ||||| ||| | |||||||| || || || || || || Sbjct 673 TTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTG 614 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || |||||||| ||||| Sbjct 613 ATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || ||| ||||| || |||||||| |||| Sbjct 1333 CCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTC 1274 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | ||| || || |||||||| | ||| |||||||| || || Sbjct 1273 AGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGA 1214 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||||||||| ||||| ||| | || || |||||||| Sbjct 1213 ATACCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACC 1154 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || || ||||| || ||||||||||| Sbjct 1153 TCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 >seq1793 Length=11804 Score = 105 bits (116), Expect = 7e-18 Identities = 657/1048 (63%), Gaps = 25/1048 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | |||| || || || ||||| ||||| ||||||| || | | Sbjct 6815 CAGCATATGATTATGCGTGTCGCTGTCGGCATCTGGGGCGACAACATTGAGCGCGTCATT 6874 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||||||| | | ||||| || || || ||||| || || ||| | || Sbjct 6875 GAAACGTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCTCCGACCCTTTTCAAT 6934 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || | | | || |||| || || || | | |||| || |||||| Sbjct 6935 GCTGGTACTCCCCAGGCCCAGCTGTCATCCTGCTTCCTCGTCGACATGAAGGATGACAGC 6994 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGAT-TGCGCCAATATTTCCAAATACGGC-GGCG 7801 ||||| ||||| || ||||||| | || ||||||| || |||||| | ||| |||| Sbjct 6995 ATCGAGGGCATCTATGACACGCT-CAAGACCTGCGCCATGATCTCCAAA-ATGGCTGGCG 7052 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861 | || || || ||||| || | | || |||| || ||| | |||||||| Sbjct 7053 GCATTGGCCTCAACGTCCACCGCATCCGTGCCACTGGCTCATACATTGCTGGCACCAACG 7112 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| || | |||||| | || |||||||| ||| ||| || |||||| Sbjct 7113 GTACTTCCAATGGCGTCATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGATATGTAG 7172 Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||||| || ||||| ||| ||| ||||||||| ||||||| |||||||| | Sbjct 7173 ACCAGGGTGGCAACAAGCGACCAGGTGCCTTTGCCATCTACCTGGAGCCTTGGCACGCTG 7232 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038 | | | | | || | || ||| ||| || || || ||||| | Sbjct 7233 ATGTCTTTGAGTTCCTCGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGCGCGCGGG 7292 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCAC 8098 | || ||| ||| ||||| | || ||||| || |||| ||| || | ||| Sbjct 7293 ACCTTTTCCTCGCCCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCG 7352 Query 8099 AATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158 | ||| | |||||||| ||| || ||||| | || || ||| | | Sbjct 7353 ACTGGACTCTCATGTGTCCCAATGAGTGCCCCGGCCTTGCCGACTGCTATGGTGAGGAGT 7412 Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGC 8218 |||| ||||| || | ||||| | || ||| | | | ||||| | ||| Sbjct 7413 TTGAGGCTCTGTACGAAAAGTACGAGCGTGAGGGC----AAGGGTCGCAAGACCATCCGC 7468 Query 8219 G-CGACCTGCACCG---CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274 | | | || | | | ||||| | ||| ||| | || ||||| | || | |||| Sbjct 7469 GCCCAGAAGCTCTGGTACTCCATTTTGGAAGCTCAGACTGAGACCGGCAACCCCTTCATG 7528 Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334 || ||||| || ||||||||| || ||||| || | ||| | || ||||| | | Sbjct 7529 CTCTACAAGGATGCTTGCAACAAGAAGAGCAACCAGAAGAACCTAGGAACCATCAGAAGT 7588 Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAAT 8394 ||||| ||| | || ||| | | ||| ||| || ||||| |||||||| ||||| Sbjct 7589 TCTAATCTCTGCACGGAGATTATCGAATACTCCGCCCCGGACGAGGTGGCCGTCTGCAAC 7648 Query 8395 CTAGCGTCGGTGTGTTTAAACGCGTTCGTTG-----ATCGACGCTCAAACACTTACGACT 8449 || || ||| | | || || |||| | ||| |||| | || |||| Sbjct 7649 CTTGCTTCGCTCGCCCTTCCTGCCTTTGTTGACTACAACGAGGCTCGA-----TATGACT 7703 Query 8450 TTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATG 8509 || | | || | ||| || || ||| ||||| || | ||||| || | Sbjct 7704 TTCAGAAGCTGCATGACGTGACTCAGGTCGTGGTCCGCAACCTAAACAAGATCATCGACG 7763 Query 8510 TCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCG 8569 |||| ||| ||| || | || || ||| |||||||||||||||||| | || | Sbjct 7764 TCAACCATTACCCCGTGCAGGAGGCTCGCAACAGCAACATGCGCCACAGACCCATCGGTG 7823 Query 8570 TGGGCGTGCAAGGTCTGGCCGACGCGTT 8597 | || || || ||||| |||||||| || Sbjct 7824 TCGGTGTTCAGGGTCTTGCCGACGCCTT 7851 >seq1479 Length=130260 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| || ||||||||| | ||| | || ||||| || ||||| || |||| Sbjct 49445 CCTTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAA 49504 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || || || || || || || ||||| ||||| || Sbjct 49505 TCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGT 49564 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| || ||||||||||| || | || || |||| Sbjct 49565 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGA 49624 Query 134704 AA 134705 || Sbjct 49625 AA 49626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505385550245680