Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1923 82.4 6e-11 >seq1923 Length=107003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 231/344 (67%), Gaps = 18/344 (5%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||| ||||| |||| || || |||||||| ||||| ||||| | Sbjct 8387 ATTTGGCAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAAGAGATTGATCTC 8328 Query 43790 ACTAAAGACTTAGCAC-ATTGG---ATTGCATTAAA--ACCACAAGAAAAACATTTTATA 43843 | |||| | |||| ||||| | | ||| || | || ||||| || || || Sbjct 8327 TC-AAAGGATCTGCACGATTGGAATAATCGATTGAATGATGACGAGAAATAC--TTCATC 8271 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 ||| | |||| || ||||| || ||||| || ||||| || || |||| Sbjct 8270 TCTCACATCCTGGCTTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTGGTAGAG 8211 Query 43904 CGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 || || ||| || ||||| | |||||||| ||||| || || |||||||| || Sbjct 8210 CGATTCAGCG-GCGAGGTTCAGGTTCCAGAAGCCCGATGCTTCTACGGGTTTCAGATCAT 8152 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022 || || || || || || || | ||| | ||||| || || |||||||| || Sbjct 8151 GATGGAGAACATCCACTCTGAGACATACTCGTTGCTGATCGACACATACATCAAGGA--- 8095 Query 44023 GCACGAGAAGC---ATCGATTGTTTAATGCGATAGA-AACAGTA 44062 ||||| ||| || ||||| ||||| || || | ||||| Sbjct 8094 GCACGCCCAGCGTAATTACTTGTTCAATGCCATCGAGACCAGTA 8051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446147314170