Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1793 309 4e-79 seq1923 93.3 5e-14 >seq1793 Length=11804 Score = 309 bits (342), Expect = 4e-79 Identities = 1129/1740 (65%), Gaps = 47/1740 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || |||||||| || | ||||| || | ||||| || | || ||| Sbjct 8529 TAGTACATGCCCGTCTTGAGACCCAGCTTCCAGCCGGCAAAGTGCATCGAGGTGATTTTG 8470 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAG-CGC 110485 |||||| || || |||| || ||||| ||| |||| ||||||||||| ||| Sbjct 8469 CCCATCGTGGGGTCTTTCATGTGGATGTTCAGCGACTGCGACT--GGTCAATGAAGGCGC 8412 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 | | || | || ||||| | || || | | | ||| |||||||| || ||| Sbjct 8411 CGCGGTCG-GCGGCCATCTGAACAACCTGACGCTGCGAAATCTCCCAAACGGTCTTGTAG 8353 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 || |||||| || | ||||| | | || || |||||||| || | | | Sbjct 8352 AGCGCCTTGATGTCGGCAGGGATGTTGGGAATGTTTTGGATGGATCCGTTCTCGGCAATG 8293 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | |||||| ||||| || | ||||| |||| ||| | Sbjct 8292 ATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACCAGGTCCTTGAGGAGCCAC 8233 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 ||| || | ||||| || || | | | | | |||||||||| | |||||| Sbjct 8232 GGGTTCACGACCTGGAACTCCCCAGCCAAGACACGGCGCTGGTAGATGTTGGACGTGTAT 8173 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || || || || ||||| || || | ||| || | ||| ||||| || ||||| || || Sbjct 8172 GGCTCGAAACACTCATTGTTGCCGAGGATCTGAGAGGTCGAGGCCGTGGGCATGGGAGCA 8113 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | ||| | ||| || | ||| | ||||||||| | ||||| ||| ||||| || Sbjct 8112 AGCAACAAGGAGTTGCGGATACCATGCTCCTTGATTTGCTCCTTCAGATTGTCCCATTCC 8053 Query 110846 TA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903 | ||| || || || || |||| ||||||||||||| || | || | || || | Sbjct 8052 CACAGTTCAGAA-GGCTTGACGTTCC-ACATGTCAAACTGGAGAATACCCTCCGAGGCAG 7995 Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 110963 | || || |||||||| ||| | ||| || | | || | || | ||| || Sbjct 7994 GTGATCCTTCAAAGGTGGAATAAGGACCCTGCTCCTTGGCAAGCTCCATGGACGCAGTCA 7935 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| ||||| || | ||| || || || | |||| ||| || || ||| | Sbjct 7934 AGGAGGCGTGGTAGACGGTCTCGAAAATCTGCTTGTTCAACTCACGAGCCTCGGGTGACT 7875 Query 111024 CAAATGCGTAG-CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 |||| | | || ||| | || | || || ||||| |||||||| | ||| || Sbjct 7874 CAAA-GGGCAGACGGAGAGCGAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATG 7816 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 |||||||| ||||| || || || || || ||||| ||| || ||| ||| Sbjct 7815 GGTCTGTGGCGCATGTTGCTGTTGCGAGCCTCCTGCACGGGGTAATGGTTGACGTCGATG 7756 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202 | |||||| || | || | || || | ||||| || || | | | ||| | Sbjct 7755 ATCTTGTTTAGGTTGCGGACCACGACCTGAGTCACGTCATGCAGCTTCTGAAAGTCATA- 7697 Query 111203 GTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 111259 |||| ||| | | | ||| | |||||||||| || || | ||||| || Sbjct 7696 --TCGAGCCTCGTTGTAGTCAACAAAGGCAGGAAGGGCGAGCGAAGCAAGGTTGCAGACG 7639 Query 111260 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATC 111319 ||| ||| ||| | | ||| || | ||| || || || | || ||||| | || Sbjct 7638 GCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAGAGATTAGAACTTCTGATG 7579 Query 111320 GTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 111379 || || | ||||| ||||| |||||||||||||| |||||||||||||||||| |||| Sbjct 7578 GTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATGAAGGGG 7519 Query 111380 GTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAAT 111438 | || ||||| ||||| | || | ||| | | ||| | | || | ||| | || Sbjct 7518 TTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGAGCTTCTG-GGCGCG---GAT 7463 Query 111439 GGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495 || ||| | || | ||||| |||||||||| ||| || || |||||||||||| | Sbjct 7462 GGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCA-C 7404 Query 111496 CACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT 111554 || || ||||| || || || || | ||||| | |||| ||| | || | Sbjct 7403 CATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGAGAGTCCAGTCGCCGTTCT 7344 Query 111555 CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTCTACA 111612 ||| || ||||||||||| || || || ||||||||| || |||| || || | Sbjct 7343 TCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGAGGAAA--AGGTCCCGCGC 7286 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 ||| |||| || | || ||||| |||| || |||||||| | || ||| ||||| Sbjct 7285 GCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACTCAAAGACATCAGCGTG 7226 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 111726 ||| ||||| || |||| || | | || | | ||| ||| | || | ||| Sbjct 7225 CCAAGGCTCCAGGTAGATGGCAAAGGCACC---TGGTCGCTTGTTGCCACCCTGGTCTAC 7169 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||| | || ||| ||| || || || ||||| ||||| | |||| || ||| || Sbjct 7168 ATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGAAGTACCGTT 7109 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || ||| || | |||| | | |||| || | ||||| || || Sbjct 7108 GGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGAGGCCAATGCCGCC 7049 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||| || ||||| || || | | || || ||||||| || | ||| ||| Sbjct 7048 AGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTC 6989 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGA 111965 ||||| || ||| |||||||| |||| ||| || || || ||||||||||||| Sbjct 6988 ATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTG-GGCCTGGGGAGTACCAGCATTGA 6930 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 | ||||| || | ||||| ||| | | |||| |||||| || ||| || || | Sbjct 6929 AAAGGGTCGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGTTGTACGTTTCAAT 6872 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| ||||||| || || |||||||| ||||| ||||| | ||| | ||| || Sbjct 6871 GACGCGCTCAATGTTGTCGCCCCAGATGCCGACAGCGACACGCATAATCATATGCTGGGG 6812 >seq1923 Length=107003 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || ||||| || |||||| || || Sbjct 7757 GGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCC 7816 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||||||||||||| |||| | || | | || | ||| ||||||||| Sbjct 7817 GGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGAT 7876 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAA 122836 ||||| ||| ||||| || | | || | ||||||| | || | ||| | | || Sbjct 7877 GCCCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTG-GATTCCTTGTCCTGAA 7935 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||| | || ||||| | ||||||||| |||||| || || Sbjct 7936 TCCAGTGAATAGCCCAGTCCGCCTTCTTGCGAATACAGGGAAC 7978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016032286400