Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1793 233 2e-56 seq1259 84.2 3e-11 >seq1793 Length=11804 Score = 233 bits (258), Expect = 2e-56 Identities = 1114/1747 (64%), Gaps = 59/1747 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||| || || |||| || || || ||||||| ||| Sbjct 6812 CCCCAGCATATGATTATGCGTGTCGCTGTCGGCATCTGGGGCGACAACATTGAGCGCGTC 6871 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | || || ||| || |||||| |||| | | ||| ||||| | || ||||| | Sbjct 6872 ATTGAAACGTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCTCCGACCCTTT 6929 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||||||||| || |||| |||| |||||||| ||| || ||||| | Sbjct 6930 TCAATGCTGGTACTCCCCAGGCCCAGCTGTCATCCTGCTTCCTCGTCGACATGAAGGATG 6989 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | || ||||||| || || | | || || ||||| || ||||| Sbjct 6990 ACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAAATGGCTG 7049 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || |||| | | |||| | || ||| || || | Sbjct 7050 GCGGCATTGGCCTCAACGTCCACCGCATCCGTGCCACTGGCTCATACATTGCTGGCACCA 7109 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || |||| | ||||| ||||| || || || ||| ||| || | |||| Sbjct 7110 ACGGTACTTCCAATGGCGTCATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGATATG 7169 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 || | || | ||| ||| | | || | | || |||| || ||||| |||| Sbjct 7170 TAGACCAGGGTGGCAACAAGCGACCA---GGTGCCTTTGCCATCTACCTGGAGCCTTGGC 7226 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | |||||||| || | ||| ||||| || | ||||||| || Sbjct 7227 ACGCTGATGTCTTTGAGTTCCTCGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGCG 7286 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 || || || ||| ||| || ||||| || ||||||||||||||| | || ||| ||| Sbjct 7287 CGCGGGACCTTTTCCTCGCCCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGA 7346 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 ||| | ||| ||||| | ||||| | || || || || |||| ||| | ||| Sbjct 7347 ACGGCGACTGGACTCTCATGTGTCCCAATGAGTGCCCCGGCCTTGCCGACTGCTAT-GGT 7405 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866 ||||||||||| || || ||| |||||||||| || | | ||||| ||| | Sbjct 7406 GAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGCGTGAGGGCAAGGGTCGCAAGAC--CA 7463 Query 104867 ACGGTG-CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | | | |||| || | ||| | | ||| | | |||| || ||||| || | Sbjct 7464 TCCGCGCCCAGAAGC-----TCTGGTACTCCATTTTGGAAGCTCAGACTGAGACCGGCAA 7518 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| || || || ||| | ||||| || || ||||| | || Sbjct 7519 CCCCTTCATGCTCTACAAGGATGCTTGCAACAAGAAGAGCAACCAGAAGAACCTAGGAAC 7578 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 |||| ||||| |||||||| || || || | |||| | | | || ||| ||| Sbjct 7579 CATCAGAAGTTCTAATCTCTGCACGGAGATTATCGAATACTCCGCCCCGGACGAGGTGGC 7638 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACA 105103 || || ||||| || || |||| || || | ||| || | | | || | | | Sbjct 7639 CGTCTGCAACCTTGCTTCGCTCGCCCTTCCTGCCTTTGTTGA-CTACA-ACGAGGCTCGA 7696 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | | | || || || || || || | || | |||||||||| | Sbjct 7697 TATGACTTTCAGAAGCTGCATGACGTGACTCAGGTCGTGGTCCGCAACCTAAACAAGATC 7756 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 || || || ||||||||| || ||||| || || ||| | ||| | || Sbjct 7757 ATCGACGTCAACCATTACCCCGTGCAGGAGGCTCGCAACAGCAACATGCGCCACAGACCC 7816 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTT 105280 || ||| |||||||||||||||| || || | ||| | ||| ||| | | ||| Sbjct 7817 ATCGGTGTCGGTGTTCAGGGTCTTGCCGACGCCTTCCTCGCTCTCCGTCTGC---CCTTT 7873 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || ||| || || | || || || || |||||| | || |||||| | Sbjct 7874 GAGTCACCCGAGGCTCGTGAGTTGAACAAGCAGATTTTCGAGACCGTCTACCACGCCTC- 7932 Query 105341 CTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 ||||| | || || ||| | || ||| | ||||| ||| |||||||| || | Sbjct 7933 CTTGA-CTGCGTCCATGGAGCTTGCCAAGGAGCAGGGTCCTTATTCCACCTTTGAAGGAT 7991 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-- 105455 | || || || | || | || || ||||| |||| |||| || |||| |||| Sbjct 7992 CACCTGCCTCGGAGGGTATTCTCCAGTTTGACATGT-GGAACGT-----CAAGCCTTCTG 8045 Query 105456 -AC--TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 || | || ||||| ||| ||||| | ||||||||| | ||| | || ||| Sbjct 8046 AACTGTGGGAATGGGACAATCTGAAGGAGCAAATCAAGGAGCATGGTATCCGCAACTCCT 8105 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 | | | ||||| ||||| || ||||| ||| | || ||| | || || ||||| || | Sbjct 8106 TGTTGCTTGCTCCCATGCCCACGGCCTCGACCTCTCAGATCCTCGGCAACAATGAGTGTT 8165 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || || |||||| | |||||||| | | | | | | || || ||||| | | | Sbjct 8166 TCGAGCCATACACGTCCAACATCTACCAGCGCCGTGTCTTGGCTGGGGAGTTCCAGGTCG 8225 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | ||| | ||| | | ||||| || || ||||| |||||| | | |||||| Sbjct 8226 TGAACCCGTGGCTCCTCAAGGACCTGGTCGACATGGGTCTGTGGTCCGATGCCATGAAGA 8285 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTA 105752 | | ||| | | | || ||||| ||||| ||| | || || || || | Sbjct 8286 ACCGCATCATTGCCGAGAACGGATCCATCCAAAACATTCCCAACATCCCTGCCGACATCA 8345 Query 105753 AGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 || | | ||| || |||||||| || | | | || || | |||||||| | Sbjct 8346 AGGCGCTCTACAAGACCGTTTGGGAGATTTCGCAGCGTCAGGTTGTTCAGATGGCCGCCG 8405 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAAC 105870 | || || ||||||||| | |||| ||| |||| || |||| || || || Sbjct 8406 ACCGCGGCGCCTTCATTGACC--AGTCGCAGTCGCTGAACATCCACATGAAAGACCCCAC 8463 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 |||| ||| || | || |||||| | | | |||||| ||||||||| ||||| || Sbjct 8464 GATGGGCAAAATCACCTCGATGCACTTTGCCGGCTGGAAGCTGGGTCTCAAGACGGGCAT 8523 Query 105931 GTATTAC 105937 ||| ||| Sbjct 8524 GTACTAC 8530 >seq1259 Length=27818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 179/262 (68%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || || ||||||| |||||| || ||||| ||| | | | || || Sbjct 2117 GGCGTCGATTTCGTCGATGAAGATGATGCAAGGGGCATTTTTGCGGCCTTCGGCGAACAG 2176 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 ||| || || | | | ||| || ||||||||||| ||||| || | || || || Sbjct 2177 ATCGCGGACCCTCGAAGGGCCGACGCCAACAAACATTTCCACGAACTCTGAACCGCTCAC 2236 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || | ||| || || || ||||| ||| |||| ||| | || |||||||| | Sbjct 2237 GCTGAA-GAACGGAACGCCGGACTCACCAGCAGTGGCCTTGGCAATGAGCGTCTTACCAG 2295 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTT--CCAAAGT 9938 |||| || ||||| |||| ||||| || || ||||||||||| | || |||| | Sbjct 2296 TACCCGGAGGGCCCGCAAGGATCGCACCGCGCGGGATCTTGGCGCCGAGTTTCTCAAACT 2355 Query 9939 ATCTCTCAGGTTGCTTAAGAAA 9960 |||| || ||||| ||||| Sbjct 2356 ---TCTCGGGCTGCTTGAGAAA 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583245970594160