Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1693 246 9e-60 seq1893 143 8e-29 seq1745 113 1e-19 seq1479 95.1 4e-14 >seq1693 Length=13545 Score = 246 bits (272), Expect = 9e-60 Identities = 843/1302 (65%), Gaps = 14/1302 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | ||||| || || ||||| || || || ||||| | | | | | | || || Sbjct 6593 GCTGTCGGAATTGACTTGGGTACCACATACTCATGTGTGGGTATCTTCCGCGAGGACCGA 6652 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || ||||| || |||||| |||| || ||||| | |||||| || || Sbjct 6653 TGCGACATCATCGCCAATGACCAGGGTAACCGAACGACCCCATCGTTCGTTGCCTTCACT 6712 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | ||||| ||| | || || ||||||| || || || | || Sbjct 6713 GATACCGAGCGTCTCATTGGCGATGCCGCCAAGAATCAAGTCGCCATGAACCCCCACAAC 6772 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || |||||| | ||||| | | || | ||| || || Sbjct 6773 ACCGTCTTCGACGCCAAGCGATTGATTGGCCGCAAGTTCGCAGACGCTGAGGTGCAGGCT 6832 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || || || || | | | || | ||| | | | | || | | ||| Sbjct 6833 GACATGAAGCACTTCCCCTTCAA-GATCATCGACAAGGCCGGCA--AGCCTGTAGTCGAG 6889 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGGTTTT 349557 ||||| | ||||| || ||| || ||||| ||||| || |||||||||||| || | Sbjct 6890 GTTGAGTTCAAAGGCGA-CAAGAAGAATTTCACTCCCGAGGAGATTTCATCAATGATTCT 6948 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || ||| || | ||| || ||| | || | || || | |||| || || Sbjct 6949 CACCAAGATGCGCGAGACTGCCGAGAGTTATCTCGGGGGCACCGTCAACAATGCCGTCAT 7008 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || || || || || || | || ||| || || |||||||||||| || Sbjct 7009 CACTGTGCCTGCATACTTCAACGACTCACAACGTCAAGCCACCAAAGATGCTGGCCTGAT 7068 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || || || | || || || |||||||| ||||| || ||||| || || Sbjct 7069 CGCTGGTCTCAACGTGCTGCGTATCATCAACGAACCCACCGCTGCCGCCATTGCCTACGG 7128 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||||| || | | || ||| ||| |||| || |||||| | || || ||||| Sbjct 7129 TCTTGACAAGAAGGTCGAGGGTGAACGCAATGTTCTCATCTTTGATCTCGGCGGCGGTAC 7188 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || ||| | |||||||| || |||||||| || ||||||| || Sbjct 7189 TTTCGATGTGTCCCTCCTTACAATCGAAGAGGGTATCTTTGAAGTCAAGTCAACTGCCGG 7248 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| ||||| ||||| || ||||| || || || || || || Sbjct 7249 TGACACTCACTTGGGTGGTGAAGACTTTGACAACCGTCTGGTCAATCACTTCGTCAATGA 7308 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGAG-ATAATC-CTAGAGCAATGCGTCGCCTA 349975 |||||| | || | || | | ||| | || | | | || ||||||| || Sbjct 7309 GTTTAAGAG--AAAGAACAAGAAAGACCTGAGCACAAACAGTCGCGCTCTGCGTCGTCTC 7366 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 |||| || || || ||||| |||||| || | || || | | || ||||| ||||| Sbjct 7367 CGAACCGCCTGCGAGCGTGCCAAGCGTACCCTCTCTTCCTCAGCGCAGACCTCCATTGAG 7426 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 ||||| ||||| ||| |||| || || | | || || || || ||||| ||||| Sbjct 7427 ATTGACTCTCTCTTTGAGGGCATCGACTTTTACACCTCCATCACCCGAGCTCGTTTTGAG 7486 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 || | || ||| | || | | || || | ||||| || || | ||| Sbjct 7487 GAGCTCTGCCAGGACTTGTTCCGCTCTACTATCCAGCCTGTCGACCGCGTCCTTGCCGAT 7546 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || || || ||| | || | | || | || || || |||||||| || || ||| Sbjct 7547 GCTAAGATTGACAAGAGCCAAGTGCACGAGATTGTCTTGGTCGGTGGTTCCACCCGCATT 7606 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA-CCTTCTAGATCAAT 350274 || | |||| || | | | || | || || ||||| ||| || | ||| | || Sbjct 7607 CCCCGAATTCAGAAGCTCATCACCGACTACTTCAACGGCAAGGAACCCAACAAGAGC-AT 7665 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| |||||||| || ||||| |||||||| || | ||| | || || | Sbjct 7666 CAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTTCAAGCTGCCATTCTTTCCGGCGA 7725 Query 350335 TAAGAGTTCTAAA---ATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | || ||| | |||| | | || || ||||| | || |||||||| || Sbjct 7726 CACTTCATCCAAATCCACCAATGAAATCCTGCTGCTTGATGTCGCGCCTCTTTCGCTCGG 7785 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | || ||| | |||| | ||||| | || |||||||||| || | || || Sbjct 7786 TATTGAGACTGCCGGTGGTATGATGACCAAGTTGATCCCTAGAAATACCACCATTCCCAC 7845 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCC 350493 || ||||| || || || || || | || || ||||| Sbjct 7846 CAAGAAGTCTGAAGTCTTCTCCACCTTCTCCGACAACCAGCC 7887 >seq1893 Length=9943 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| ||||| || || ||| || || || || ||||| | || || |||||| Sbjct 1318 AGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCT 1259 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || ||||||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 1258 TCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCT 1199 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 |||||||||| || || || ||||| | |||| | ||| || || | |||| |||| Sbjct 1198 TGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTC 1139 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| |||||||| ||||| Sbjct 1138 TTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107 Score = 138 bits (152), Expect = 3e-27 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 140492 CAAACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTT 140551 ||| ||| | ||| ||| ||||| || | | || || ||||| || ||||| || || Sbjct 821 CAACCTACAAATTTGCATGCCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTT 762 Query 140552 TTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAG 140611 || || || || || || | || || |||||||| ||||| || ||||| || || || Sbjct 761 CTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAG 702 Query 140612 ACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 || ||||| || ||||| || || || || |||||||| || | || ||||| || || Sbjct 701 TCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGAT 642 Query 140672 CGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAAT 140731 | || |||| || || ||||| || | ||||| ||||| ||||| || || ||||| Sbjct 641 GGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAAT 582 Query 140732 CTGCAT 140737 |||||| Sbjct 581 CTGCAT 576 Score = 136 bits (150), Expect = 1e-26 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | | || | |||||| || || || |||||||| || | Sbjct 1113 TTTGCATGCCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGT 1054 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || ||||||||||||||||| || ||||| || || ||||||||||| | Sbjct 1053 AGTCGGAGAGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGT 994 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || ||||| ||||||||||| || | || || || ||||| | || || | Sbjct 993 CCGGAGGGATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGG 934 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || |||| ||||| || || || || || || Sbjct 933 ACTCAACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 >seq1745 Length=53961 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || ||||| || || || | || || ||||| || || ||||| |||||||| Sbjct 17039 CTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAA 17098 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| || || |||||||| || || |||||||| || |||||||| || | || ||||| Sbjct 17099 GATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATT 17158 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| | || || | || || || || || | ||||| || || || ||||| || Sbjct 17159 GTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGAC 17218 Query 140726 AAAAATCTGCAT 140737 || |||||||| Sbjct 17219 GAAGATCTGCAT 17230 >seq1479 Length=130260 Score = 95.1 bits (104), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| ||||| || || || | ||||| ||||| || ||||| || || || || || Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||| ||||||||||| || || || ||||| ||||||| || ||||| || Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||||| | || || || || || | || || || || || || || || ||| Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAAA 49626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515214911523302