Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1793 237 2e-57 seq1207 143 3e-29 seq1923 93.3 5e-14 >seq1793 Length=11804 Score = 237 bits (262), Expect = 2e-57 Identities = 412/592 (70%), Gaps = 8/592 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| ||||| | || ||| || ||| || ||| ||| ||| |||||| || Sbjct 6827 ATGCGTGTCGCTGTCGGCATCTGGGGCGACAACATTGAGCGCGTCATTGAAACGTACAAC 6886 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | |||| ||| || |||||| | || ||||| ||||| |||||||| Sbjct 6887 CTCATGTCCAGCAAGTTCTTCACCCACGCCTCTCCGACCCTTTTCAATGCTGGTACTCCC 6946 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | ||| |||| ||||||||| || | |||||||||||| ||||| |||||| Sbjct 6947 CAGGCCCAGCTGTCATCCTGCTTCCTCGTCGACATGAAGGATGACAGCATCGAGGGCATC 7006 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || ||||||||| || ||| |||||||| | | || || || || || || Sbjct 7007 TATGACACGCTCAAGACCTGCGCCATGATCTCCAAAATGGCTGGCGGCATTGGCCTCAAC 7066 Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | || ||||||| | ||| || || || || ||||| || ||| Sbjct 7067 G--TCCACCGCATCCGTGCCACTGGCTCATACATTGCTGGCACCAACGGTACTTCCAATG 7124 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || | || |||||||| || ||||||||||||||| | || || |||||||||| Sbjct 7125 GCGTCATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGATATGTAGACCAGGGTGGCA 7184 Query 53553 GGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| | ||| | | || ||||||||||| ||||| |||||||| || | | ||| Sbjct 7185 ACAAGCGACCAGGTG-CCTTTGCCATCTACCTGGAGCCTTGGCACGCTGATGTCTTTGAG 7243 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || ||||| || ||| ||| || || | || ||| | ||| || ||||| || Sbjct 7244 TTCCTCGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGCGCGCGGGACCTTTTCCTC 7303 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || |||||||| || || ||||||||| | || |||||| ||| || ||| || Sbjct 7304 GCCCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTC 7363 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTT 53782 ||||| || || ||||||||||||| | | | || ||| |||||||||||| Sbjct 7364 ATGTGTCCCAATGAGTGCCCCGGCCTTGCCGACTG-CTATGGTGAGGAGTTT 7414 Score = 141 bits (156), Expect = 1e-28 Identities = 311/455 (68%), Gaps = 27/455 (6%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||| || | | || || ||||| || || ||||| |||||||| | |||||| Sbjct 8096 CGCAACTCCTTGTTGCTTGCTCCCATGCCCACGGCCTCGACCTCTCAGATCCTCGGCAAC 8155 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| |||||||| |||||| |||||||||||| |||||| | | || || ||| Sbjct 8156 AATGAGTGTTTCGAGCCATACACGTCCAACATCTACCAGCGCCGTGTCTTGGCTGGGGAG 8215 Query 55604 TTT---GTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 || ||| ||| || | ||| ||||||||||| | || |||| Sbjct 8216 TTCCAGGTCGTGA---ACCCGTGGCTCCTCAAGGACCTGGTCGACATGGGTCTGTGGT-- 8270 Query 55661 CCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGG 55712 ||| | || |||| || || |||| |||||| ||| |||| || || Sbjct 8271 CCGATGCCATGAAGAACCGCATCATTGCCGAGAACGGA---TCCATCCAAAACATTCCCA 8327 Query 55713 AGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | || ||| || | |||||| | | ||| ||| || ||||||||| | ||| || Sbjct 8328 ACATCCCTGC-CGACATCAAGGCGCTCTACAAGACCGTTTGGGAGATTTCGCAGC---GT 8383 Query 55772 CTGATTG---ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | | ||| | ||| || || || || || | ||| |||||||| ||||| |||||| Sbjct 8384 CAGGTTGTTCAGATGGCCGCCGACCGCGGCGCCTTCATTGACCAGTCGCAGTCGCTGAAC 8443 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 ||| |||| | | || | ||| ||| | | ||||||||||||| ||| |||||| Sbjct 8444 ATCCACATGAAAGACCCCACGATGGGCAAAATCACCTCGATGCACTTTGCCGGCTGGAAG 8503 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| ||||||||||| |||||||| |||| || Sbjct 8504 CTGGGTCTCAAGACGGGCATGTACTACTTGCGCAC 8538 >seq1207 Length=30380 Score = 143 bits (158), Expect = 3e-29 Identities = 228/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333 |||||| ||||||| | ||||| | || || || ||||||||| || || ||||| Sbjct 28386 GAATATCTTCTTGGCAAATGGTGCCAACCGGGTAAAGGTGTAACGAGGACTGGCGGCATC 28327 Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393 ||||||||||||||| | ||| || | || || |||||||||| ||| | |||||| Sbjct 28326 GGAGCCACCAGCAAGACGAGAACCAAAGTTCCCGCTAGGCTCCAAGATGTTGATGTTGTT 28267 Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453 | || ||||| || || |||| | | ||| || || || ||| || || || Sbjct 28266 TGATCCAACAAAATTCTGCGCCAGGCCAATAATGGTCTGCTGCAGCGACGCTTCGCCGTG 28207 Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGT 117513 ||| || || |||||||| | ||||| ||||| |||| | ||||| |||| || Sbjct 28206 GTGGTATGCAGTCTGCTCAGAGACGTAACCCGCAAGCTCCACGACCTTTTTGTCCTTGGT 28147 Query 117514 CAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGC 117573 ||||||| |||| || || || | ||| || ||||| | ||||||| ||||| Sbjct 28146 CAGGTTCCGTTTGAAACAAGCGTACAGCACTTTCCGCTGCCCGGGCTTCAACCCATCAAT 28087 Query 117574 CACGTGAGGGATCGAACGCTTGATGTC 117600 ||| || || |||||| || |||| Sbjct 28086 GACGGATGGTATTGAACGCATGTTGTC 28060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 233/346 (67%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || | ||||||||||| || || | ||| || | ||||||||| || Sbjct 27609 GTTGATGAGAAGCCCCTTGATGTGACTGCCATCGTGGTCCTGATCTGCCATGATCATGAG 27550 Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGT--TGAAGCCCGAG 152885 | | || ||||| ||| | | | ||| | |||||| || | ||| | || ||||| Sbjct 27549 ATGGCCATAGCGGAGG-CTCTTTGTGTCGGTGTAGAC--TTGCTTGTGCTTGAGACCGAG 27493 Query 152886 GATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCG 152945 || || ||||| ||| | ||||| || | ||| | || | | | ||| || || Sbjct 27492 GAACTGTTTGATGTTTTGGATTTCCTGGTTCTTGGTGATTTGGTCGATGGAGGCGTCGCG 27433 Query 152946 AACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG-CCTACAA-CG 153003 || ||| || | || || |||||||| || |||||| | || | ||| | | || || Sbjct 27432 CACGTTGAGCAGTTTACCTCGGAGTGGGAAGACGCCG-ATTCGATCCGGATCGAGAATCG 27374 Query 153004 CTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAG 153063 | | | |||| | ||| ||| | || || ||||| || ||||| | ||| || || || Sbjct 27373 C-CCGGCCGGATACAGCCAGGCCCTTGGCGGAGTCTCCTTCGGTCAGAATGAGGGTGCAC 27315 Query 153064 TCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109 ||||| || | || |||||| ||||||| ||| | ||||||| Sbjct 27314 TCGTGGCCGCGCTTCGTTCCGGCCAAGTTGGCCTCGACGAGCTTGG 27269 >seq1923 Length=107003 Score = 93.3 bits (102), Expect = 5e-14 Identities = 301/456 (66%), Gaps = 20/456 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| ||||| ||||||||||| || ||| |||||||| ||||| Sbjct 7470 TACTCGCCGACTCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGTGAGATGTTTTCCATG 7529 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 | || || ||||| | ||| | |||||| || | | | ||| ||| Sbjct 7530 AAATCAAAGGGGTTGGCCGTCTTGTACAC---CTTCTCGTTGCCGAGAGCGA-CCAGGAG 7585 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||| || || || |||| |||||||||| |||| || | |||||||| || Sbjct 7586 GCGGTCAGCGACGAATTCAATGTACTGCTTCATCAGAGTAGCGTTCATGCCGAGTAGAGC 7645 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATC 74696 ||||||| |||||||| | ||||| ||| | | | | | | || | || Sbjct 7646 ACACGGCAAAGCCTCGGTCAGGAACTCCTGCTCGA--TGGTGACGGCGTCGGTGATGATG 7703 Query 74697 TTGTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | | ||| ||| ||| ||||| | | ||||||| |||| ||| | || ||| Sbjct 7704 TCTTTGATGATCTGCTTGCT--GGCACGGTGCT-TCAGGTGCGAGTGCAGCAGGCA-GGC 7759 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| || || || | || | ||| || || || | ||||| || Sbjct 7760 AAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGGCCGGG 7819 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| | || |||||||||| ||||||||||| |||| || |||||||||||||| Sbjct 7820 CATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAGATGCC 7879 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || ||| ||||||||||| | || || ||||| Sbjct 7880 CTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAA 7915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202087033200