Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1154 120 2e-22 >seq1154 Length=35070 Score = 120 bits (132), Expect = 2e-22 Identities = 273/403 (68%), Gaps = 12/403 (3%) Strand=Plus/Plus Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30121 |||||||||||| | | |||| ||||| || | ||||||||| ||| ||| | | Sbjct 3065 ACGTAAAACTGAGCAAAGACGTGACACGGCGGCAACGCCATGAGGTGCAAATCTCGCGCG 3124 Query 30122 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30181 ||||| |||| || |||||| | || || | || ||||| |||| ||| | | Sbjct 3125 TTCCACGCGCTCATGATGATTCTCCGATCGTACGGCTTGTTTCTGAGCTTGTCGATTACC 3184 Query 30182 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30241 | |||||||| || ||| | || | ||| || | | | || |||||| || Sbjct 3185 TCGGCGAGCTGATCGACGCCCTTGCCAGTGTAATCCGTCTTTGCATCGACGTACTCGGCG 3244 Query 30242 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30301 || ||||| | ||| ||||| |||||||| ||||| || || || ||| | ||| | Sbjct 3245 CCAAAATGGCGCCATTGGAAGCCGTACACGGGTCCAAGATCCCCAATTTCGCGCTGCGTG 3304 Query 30302 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CT 30359 | |||| ||||| | || || | ||| || ||| ||||||| ||||| || || | Sbjct 3305 AGGCCCAAGTTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCAAATCTTGACGCCGGCG 3364 Query 30360 T--CTCAGAG--AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30415 | ||||||| ||| ||| | ||| | |||||| | ||||||||||| || | Sbjct 3365 TCGCTCAGAGCCAGC---GAGGA-TGTGTTG-CCCTCT-ATGAACCACAGCAATTCGGCG 3418 Query 30416 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 | |||||| | ||| || | ||| || |||| |||||||| Sbjct 3419 ATGACGGCGCGCAGAAACACGCGCTTCGTGGTGATGAGGGGAA 3461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 || ||||| ||||| |||| | ||| | ||| || || || | || || ||||| Sbjct 2828 TAAACGTGCGCGTCGCCCATGACGTGAGTCAAGCTG-CCAGGCACAAGATCGCACACGTG 2886 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 ||| ||||||| ||||| || | |||||||| ||||| || || |||||||||||||| Sbjct 2887 AGCAATCATGTGTGTGAGAAGCGCATAGCTGGCAATGTTGAACGGCACCCCGAGCCCCAT 2946 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||| | ||||||||||| ||||| || Sbjct 2947 GTCGCAAGACCTCTGGTACAGCTGGCA 2973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300327819128