Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1893 132 4e-26 seq1745 107 2e-18 >seq1893 Length=9943 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || ||||| |||||| | ||||| || || || || | |||||| | ||||| Sbjct 891 GTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTATTGAC 950 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| ||| ||||| || || ||||| || || || || || || ||| | || Sbjct 951 AACGTCAAGTCAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAGCAACGTCTGATT 1010 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||| ||||| ||| | ||||| | ||| | ||||| ||||||||||||||||| Sbjct 1011 TTCGCTGGCAAGCAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAAAAGGAA 1070 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | |||||||| |||||| | || |||||||| Sbjct 1071 TCAACACTTCATTTGGTGTTGCGTCTCCGAGGTGGCAT 1108 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || || ||||| || || | || Sbjct 575 CATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATC 634 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| ||| ||||| ||||| || ||||| || || || || Sbjct 635 CGACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCA 694 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| ||| | ||||| | || | ||||| ||||| Sbjct 695 GCAGCGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAA 754 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | ||| | || ||||| | ||||||||||| Sbjct 755 CATCCAGAAGGAATCTACGCTGCATCTCGTCCTGCGTCTTCGGGGTGGCAT 805 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| |||| |||||| | ||||| | || |||||| | Sbjct 1106 CATGCAAATTTTTGTCAAAACCTTGACAGGCAAGACAATTACCTTGGAGGTGGAATCCAG 1165 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| ||||||||||| || ||||| || || || ||||| Sbjct 1166 TGATACTATTGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCA 1225 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || || || || |||||||| || || | ||||||||| Sbjct 1226 GCAACGTCTCATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACTCTGAGCGATTACAA 1285 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||| ||| | ||| | ||| | || |||| || || Sbjct 1286 CATCCAGAAGGAGAGCACCCTGCATCTCGTTCTTCGCCTGCGTGGAGG 1333 >seq1745 Length=53961 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| || ||| | || || || || ||||| | ||| Sbjct 17230 ATGCAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 17171 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 17170 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGATCAG 17111 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || |||||||| | || || | ||| | ||| |||||| Sbjct 17110 CAGCGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 17051 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||| ||| | || ||||| |||| |||| || || Sbjct 17050 ATTCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGACTGCGCGGGGG 17004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907342199680