Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1893 102 6e-17 >seq1893 Length=9943 Score = 102 bits (112), Expect = 6e-17 Identities = 168/239 (70%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || || ||||| | || || ||| || Sbjct 1107 ATGCAAATTTTTGTCAAAACCTTGACAGGCAAGACAATTACCTTGGAGGTGGAATCCAGT 1166 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| ||||| || || |||||| |||| ||| | Sbjct 1167 GATACTATTGACAAC--GTCAAGTCTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATC 1224 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | |||||||| ||||| || ||||| || | |||| || |||||||| Sbjct 1225 AGCAACGTCTCATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACTCTGAGCGATTACA 1284 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGG-CGGCGACGATTG 28025 ||||||| || |||||||| ||||| | ||| | || ||||||| ||| | ||||| Sbjct 1285 ACATCCAGAAGGAGAGCACCCTGCATCTCGTTCTTCGCCTGCGTGGAGGGCAATGATTG 1343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853578393518