Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1893 141 2e-28
seq1745 125 2e-23
seq1479 120 7e-22
>seq1893
Length=9943
Score = 141 bits (156), Expect = 2e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | |||||| || || || || ||||| || |||| ||||| |||| || |||
Sbjct 796 CGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTA 737
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || ||||| |||||||| || ||||| || ||||| || || || ||
Sbjct 736 CGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCC 677
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || |||||| ||| ||| ||||||||||| || | || || || |
Sbjct 676 TCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGG 617
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | |||||
Sbjct 616 GTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || || ||| || || |||| ||||||||| || ||| | ||||||
Sbjct 1318 AGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCT 1259
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| || || || ||||| || || || |||||||||||||| |||
Sbjct 1258 TCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCT 1199
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||| || || || || || || |||||| || || || || |||
Sbjct 1198 TGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTC 1139
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || | ||||||
Sbjct 1138 TTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107
>seq1745
Length=53961
Score = 125 bits (138), Expect = 2e-23
Identities = 162/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| ||| || | |||||| ||| || || || | ||||| ||| || ||
Sbjct 17010 CGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTG 17069
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || ||||| || ||||| ||||| ||||| || || || || || || |||
Sbjct 17070 CGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCT 17129
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || ||||| ||| ||| || |||||||| || | ||||| || |
Sbjct 17130 TCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGG 17189
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||||| ||||||| ||||| | ||| | ||||| ||
Sbjct 17190 GTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233
>seq1479
Length=130260
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| |||||| |||| || |||| ||||| || || ||||| || ||||| ||
Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || ||||| || |||||||| |||||||| ||||| || ||| ||| |||
Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| || || ||||||| || || | |||
Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAA 49625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192500121891596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |