Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1154 120 2e-22
>seq1154
Length=35070
Score = 120 bits (132), Expect = 2e-22
Identities = 268/399 (67%), Gaps = 4/399 (1%)
Strand=Plus/Plus
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 27387
|||||||||||| | | |||| ||||| || | ||||||||| ||| ||| | |
Sbjct 3065 ACGTAAAACTGAGCAAAGACGTGACACGGCGGCAACGCCATGAGGTGCAAATCTCGCGCG 3124
Query 27388 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 27447
||||| |||| || |||||| | || || | || ||||| |||| ||| | |
Sbjct 3125 TTCCACGCGCTCATGATGATTCTCCGATCGTACGGCTTGTTTCTGAGCTTGTCGATTACC 3184
Query 27448 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCT 27507
| |||||||| || ||| | || | ||| || | | || |||||| ||
Sbjct 3185 TCGGCGAGCTGATCGACGCCCTTGCCAGTGTAATCCGTCTTTGCATCGACGTACTCGGCG 3244
Query 27508 CCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 27567
|| ||||| | ||||||||| |||||||| ||||| || || || ||| | ||| |
Sbjct 3245 CCAAAATGGCGCCATTGGAAGCCGTACACGGGTCCAAGATCCCCAATTTCGCGCTGCGTG 3304
Query 27568 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CT 27625
| |||| ||||| | || || | ||| || ||| ||||||| ||||| || || |
Sbjct 3305 AGGCCCAAGTTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCAAATCTTGACGCCGGCG 3364
Query 27626 TCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 27685
|| | ||||| | | ||| | |||||| | ||||||||||| || | | ||
Sbjct 3365 TCGCTCAGAGCCAGCGAGGATGTGTTG-CCCTCT-ATGAACCACAGCAATTCGGCGATGA 3422
Query 27686 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724
|||| | ||| || | ||| || |||| ||||||||
Sbjct 3423 CGGCGCGCAGAAACACGCGCTTCGTGGTGATGAGGGGAA 3461
Score = 98.7 bits (108), Expect = 7e-16
Identities = 126/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTC 27197
|| |||| ||| |||| || || ||||| ||||| |||| | ||| | ||| ||
Sbjct 2804 TTGAGCGCGTCCTCGTGGTCGGCATAAACGTGCGCGTCGCCCATGACGTGAGTCAAGCTG 2863
Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257
|| || | || || |||||||| ||||||| ||||| || | |||||||| ||
Sbjct 2864 -CCAGGCACAAGATCGCACACGTGAGCAATCATGTGTGTGAGAAGCGCATAGCTGGCAAT 2922
Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308
||| || || ||||||||||||||||| | ||||||||||| ||||| ||
Sbjct 2923 GTTGAACGGCACCCCGAGCCCCATGTCGCAAGACCTCTGGTACAGCTGGCA 2973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369498040147454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |