Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1793 183 4e-41 >seq1793 Length=11804 Score = 183 bits (202), Expect = 4e-41 Identities = 616/947 (65%), Gaps = 24/947 (3%) Strand=Plus/Minus Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 || || || || || || || ||||| | | | || |||| || ||||| || || Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 |||||| || | |||| || || || || | ||||||||||| || ||||| | ||| Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 || || || || || || | ||||| ||| |||| | ||| | ||| || | ||||| | Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGA-G 7478 Query 77865 ACTCTAGCTTTTATCATAGATTTGTATCGCCT---CTCTCTTTCATA--TTGAGTATATA 77919 ||| | || | ||| | | | ||| | || || || ||| | | Sbjct 7477 CTTCTGGGCGCGG--ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGA 7420 Query 77920 GCCGTTCAAATTCATCTCCCCAAA-CA-TCATCCAATCCAGGGCATTCATTTGGGCACAT 77977 ||| ||||| || ||| ||| | || || | | || ||||| ||||| || ||||| Sbjct 7419 GCC--TCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACAT 7364 Query 77978 CAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGC 78037 | | |||||| || | | || || || ||||| ||||||||||| ||||| || || Sbjct 7363 GAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGC 7304 Query 78038 AATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAA 78097 | || || || || | | | || || || || ||||| || ||||| || Sbjct 7303 GAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAA 7244 Query 78098 CTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATT 78157 ||| | | ||||| ||||| || || || || || || | | || ||||| || || Sbjct 7243 CTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTT 7184 Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 || ||||| |||| ||||||||| ||||| || | |||| | ||| ||||| | || Sbjct 7183 GCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCC 7124 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || || || || || |||| ||| || ||| | || || || | | Sbjct 7123 ATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTT 7064 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || || || ||||| || || || | ||||| || | || || ||||| Sbjct 7063 GAGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGAT 7004 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 78397 ||||| || ||||||||| |||||| | || || ||| |||| || || Sbjct 7003 GCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGG 6944 Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | |||||||| || || || || | || || | || || Sbjct 6943 AGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTT 6884 Query 78458 GTATGTTTCAAT----AGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGC 78512 ||| |||||||| ||| | | | |||| || |||| || || || |||||| Sbjct 6883 GTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACACGC 6829 Query 78513 ATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTT 78572 || | ||||||||| |||| || || |||| || | |||| | ||| ||| Sbjct 6828 ATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGATCGC 6769 Query 78573 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTA 78619 |||| ||| || || ||||| || | ||| |||||||| ||||| Sbjct 6768 TCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651138045760