Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1479 152 1e-31
seq1745 145 2e-29
seq1893 143 6e-29
seq1919 84.2 5e-11
>seq1479
Length=130260
Score = 152 bits (168), Expect = 1e-31
Identities = 141/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|||||||| |||||||| | || || ||||||||||| ||||| || ||||| || |||
Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || |||||| ||||||||||||||||| ||||| || | || || | |||
Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| ||||| ||||| || |||||||||| ||||| |||||
Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAA 49625
>seq1745
Length=53961
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| || || |||| || | ||||| || || || |||||||||||
Sbjct 17004 CCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 17063
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || ||||| || |||||||| | || || || || ||
Sbjct 17064 AGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGG 17123
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||| || ||||| | || || | || || ||||| |||| || ||
Sbjct 17124 ATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 17183
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| ||||||||||| ||||||| || || ||||| |||||||| ||
Sbjct 17184 TCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTT 17233
>seq1893
Length=9943
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || || || || ||||| | ||| ||| || |||||||||||||| |
Sbjct 802 CCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 743
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || |||||||| || ||||| || || || || |||| || || ||||| ||
Sbjct 742 AGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGG 683
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||||| || || | ||||| ||||| || | |||||
Sbjct 682 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACC 623
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 622 TCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576
Score = 127 bits (140), Expect = 4e-24
Identities = 160/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || || | |||| ||| | || ||| ||||| ||||||||||| |
Sbjct 1105 CCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1046
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| ||||| || ||||| || || || || |||| |||||| ||||| ||
Sbjct 1045 AGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGG 986
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||| || || ||||||| || ||| | || |||||||| || | || ||
Sbjct 985 ATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACC 926
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092
||||| || || ||||| || |||| ||||| |||| ||
Sbjct 925 TCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 886
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||||||||| || ||||| | ||||| || || ||||||||||| ||
Sbjct 1333 CCTCCACGCAGGCGAAGAACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTC 1274
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| ||||| || | || || || ||||| || | |||||| || || |||
Sbjct 1273 AGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGA 1214
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| ||||| ||||| || || | || ||| | || ||||| || | ||| ||
Sbjct 1213 ATACCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACC 1154
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| || ||||| || || || || || |||||
Sbjct 1153 TCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 1107
>seq1919
Length=9696
Score = 84.2 bits (92), Expect = 5e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 316983 GTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAA 317042
||||||||| || |||||| | |||| || | | || | | ||||| || || |
Sbjct 4081 GTCGAGGTCGTGTTCAACAAAGACAGTCTTGACTTCACTCTGCTTGGGGAAACCCTCGAC 4140
Query 317043 CTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAG 317102
|| |||| || || | ||| || || ||||| |||| ||| ||||| ||||||||
Sbjct 4141 TTGCTCGTTGTTGATGGCACGCATGAGGGTAGACTTTCCAGAACCGTTGGGACCGCAAAG 4200
Query 317103 ACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162
|||||| || | || ||| || | | |||| | ||| || |||||||| ||||
Sbjct 4201 ACCATAGCGCTGACCACGCTTGAGGCGGAGATGGGTCTGGTTGAGGAGAATCTTGGCACC 4260
Query 317163 ATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201
|| ||||| ||||| || | || ||||| |||||
Sbjct 4261 GTAGGCCAGGGAGAAGGTGCAGTTGCAGAGGTCTTCGCC 4299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046711921322236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |