Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1745 149 5e-31 seq1893 118 8e-22 seq1479 95.1 9e-15 >seq1745 Length=53961 Score = 149 bits (164), Expect = 5e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 |||||| | ||||| || ||||| ||| || ||||||||||| || |||||||| ||| Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || || ||||| || || |||||||| | ||||||||||| | || Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCC 44287 | |||||||| ||| ||||| ||| || ||| | |||||||||| || ||| Sbjct 17123 GATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT--CAATGGTGTCGGAAGACTCC 17180 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || |||||||| ||||| ||||| || |||||||| ||||| Sbjct 17181 ACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1893 Length=9943 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||||||||||| ||||||||||||||| || ||| | || ||| Sbjct 1315 ACGAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCC 1256 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || ||||| || | ||| |||||||| | ||| | ||||||||| || Sbjct 1255 AACTGCTTTCCAGCAAAAATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTGA 1196 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | | | || || || |||||||||||||| ||||| ||||| Sbjct 1195 ATTTTAGACTTGACGTTGTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTG 1136 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||| || || || ||||||||| Sbjct 1135 CCTGTCAAGGTTTTGACAAAAATTTGCATG 1106 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || ||||| ||||| ||||||||||| |||| || || | || || Sbjct 784 ACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCG 725 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || |||| |||||||| || | ||| | || ||||| ||| Sbjct 724 AGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 665 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| || || ||||| | || || |||| Sbjct 664 ATCTTTGACTTGACATTGT--CGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCT 607 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || ||||| ||||||||||| || ||||||||| Sbjct 606 TGCCGGTGAGTGTCTTCACGAAAATCTGCATGATG 572 >seq1479 Length=130260 Score = 95.1 bits (104), Expect = 9e-15 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||| ||||| |||| || || | || || || ||||| ||||| || | Sbjct 49445 CCTTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAA 49504 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | ||| | ||| ||||| ||| || || ||| || ||| Sbjct 49505 TCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGT 49564 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || || || ||||| || |||||||| Sbjct 49565 --CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCAC 49622 Query 44326 GAA 44328 ||| Sbjct 49623 GAA 49625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359981476062978