Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1893 183 7e-41 seq1745 150 4e-31 seq1479 136 1e-26 >seq1893 Length=9943 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 579 CAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGAC 638 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||||||||||||| || || ||||||||||||||||| Sbjct 639 ACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 698 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| || || || ||||||||||| | ||||| |||| || ||| || Sbjct 699 CGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAACATC 758 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || |||||||| || Sbjct 759 CAGAAGGAATCTACGCTGCATCTCGT 784 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || || ||||||||||| || ||| ||||| || | Sbjct 889 TCGTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTATTG 948 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||||||||| || ||||| |||||||||||||||||||| || | Sbjct 949 ACAACGTCAAGTCAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAGCAACGTCTGA 1008 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || || || || |||||||| | || || |||| || ||| | ||||| | Sbjct 1009 TTTTCGCTGGCAAGCAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAAAAGG 1068 Query 178111 AATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| ||| | || ||| | ||| || Sbjct 1069 AATCAACACTTCATTTGGTGTTGCGTCTCCGA 1100 >seq1745 Length=53961 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || |||||||||||||||||||| || ||| Sbjct 17227 CAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 17168 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| ||||||||||| ||||| ||||| Sbjct 17167 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGATCAGCAG 17108 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || ||||||||||| ||||| | || || ||| || ||| | Sbjct 17107 CGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATT 17048 Query 178104 CAAAAAGA 178111 || || || Sbjct 17047 CAGAAGGA 17040 >seq1479 Length=130260 Score = 136 bits (150), Expect = 1e-26 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || ||||| |||||||||||||| || ||| |||||||| Sbjct 49626 TTTCGTGAAGACGCTGACGGGTAAAACCATCACCCTCGAGGTCGAGTCCTCTGACACCAT 49567 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| || || |||||||| || || || ||||| |||||||| ||| | Sbjct 49566 CGACAATGTCAAGTCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATT 49507 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| || || ||||| ||||| | || || |||| || || ||||||| Sbjct 49506 GATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTGTCCGACTACAATATCCAAAA 49447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203699830012596