Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1893 183 7e-41
seq1745 150 4e-31
seq1479 136 1e-26
>seq1893
Length=9943
Score = 183 bits (202), Expect = 7e-41
Identities = 164/206 (80%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || ||||| || || || |||||||| ||||| || || |||
Sbjct 579 CAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGAC 638
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||||||||||||| || || |||||||||||||||||
Sbjct 639 ACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 698
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| || ||||| || || || ||||||||||| | ||||| |||| || ||| ||
Sbjct 699 CGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACAACATC 758
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || |||||||| ||
Sbjct 759 CAGAAGGAATCTACGCTGCATCTCGT 784
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || || || ||||||||||| || ||| ||||| || |
Sbjct 889 TCGTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTATTG 948
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| |||||||||||| || ||||| |||||||||||||||||||| || |
Sbjct 949 ACAACGTCAAGTCAAAGATTCAGGATAAGGAAGGGATCCCTCCGGACCAGCAACGTCTGA 1008
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| ||||| || || || || |||||||| | || || |||| || ||| | ||||| |
Sbjct 1009 TTTTCGCTGGCAAGCAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAAAAGG 1068
Query 178111 AATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||||||||| ||| | || ||| | ||| ||
Sbjct 1069 AATCAACACTTCATTTGGTGTTGCGTCTCCGA 1100
>seq1745
Length=53961
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| || || || || |||||||||||||||||||| || |||
Sbjct 17227 CAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 17168
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| ||||||||||| ||||| |||||
Sbjct 17167 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGATCAGCAG 17108
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || ||||||||||| ||||| | || || ||| || ||| |
Sbjct 17107 CGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATT 17048
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 17047 CAGAAGGA 17040
>seq1479
Length=130260
Score = 136 bits (150), Expect = 1e-26
Identities = 138/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || ||||| |||||||||||||| || ||| ||||||||
Sbjct 49626 TTTCGTGAAGACGCTGACGGGTAAAACCATCACCCTCGAGGTCGAGTCCTCTGACACCAT 49567
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| || || |||||||| || || || ||||| |||||||| ||| |
Sbjct 49566 CGACAATGTCAAGTCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATT 49507
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|| |||||||| || || ||||| ||||| | || || |||| || || |||||||
Sbjct 49506 GATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTGTCCGACTACAATATCCAAAA 49447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203699830012596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |