Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 >seq3 Length=1020397 Score = 134 bits (148), Expect = 3e-26 Identities = 276/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298 ||||| ||| || ||| ||| ||||||| || || | || |||||| ||||| Sbjct 108531 ATCTTCTGGTTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAACGAGCTCATC 108590 Query 230299 AGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC 230358 ||| |||||||||||||| | |||| | || ||| || | || ||||| Sbjct 108591 TCTCGTGACGAGGGTCTCCACACTGACTTCGCCTGCCTGCTGTTCTCTCACCTGAAGAAC 108650 Query 230359 AAGCTACCATTCGAGACGGTCAA--ACAA-ATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 || ||| | || ||| | || ||||| || || || |||| | || ||| Sbjct 108651 C-GC--CCAGGCAAGGACCTCATTGAGAAGATCATCACCGATGCCGTTGTCATTGAGAAG 108707 Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT-ATGGG 230474 |||||| | ||| ||| | || || |||| | ||||||||| | ||||| ||| Sbjct 108708 GAGTTCTTGACTGAGGCTTTGCCCTGCGCCCTTCTCGGCATGAACTCC-AACTTGATGAA 108766 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 ||||||||||| ||||| || ||||| | || || || ||||| ||||||| || || Sbjct 108767 GCAGTACATCGAGTTCGTCGCTGACCGTCTGTTGGTCGCCCTTGGCAACGAGAAGGTCTA 108826 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 | || | |||||||| | || |||||| ||| || || || ||||||||||| Sbjct 108827 CCGTTCCAGCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTT 108886 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||| ||||| ||| ||||||| || | | | ||||| ||| Sbjct 108887 CTTCGAGAAGCGAGTCGGTGACTACCAAAAGGCCGGTGTCATG 108929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811815520370