Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 149 6e-31 >seq3 Length=1020397 Score = 149 bits (164), Expect = 6e-31 Identities = 552/854 (65%), Gaps = 17/854 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | || || || ||||| ||||| || ||||| | || || || |||| Sbjct 108915 TTTGGTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCT 108856 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAA----ATATTTTAGAGTACCCCAGTTCGGCG 16789 ||||||| || || || || |||| || | | || || || || || | Sbjct 108855 CCATGAAGTCGAAGGGGTT----GCTGGAACGGTAGACCTTCTCGTTGCCAAGGGCGACC 108800 Query 16790 ATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATA 16849 | | | || || || || || || || || ||| || | | ||||||| || | | Sbjct 108799 AACAGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGA 108740 Query 16850 AGA-CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAA 16907 || || | | || ||| || ||||| || || || ||| || ||||| || || | | Sbjct 108739 AGGGCGCAGGGCAA-AGCCTCAGTCAAGAACTCCTT-CTCAATGACAACGGCATCGGTGA 108682 Query 16908 TAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967 | || | ||| | |||| | || | || || || |||| ||| || | Sbjct 108681 TGATCTTCTCAATGAGGTCCTTGCCTGGGCGGTTCTTCAGGTGAGAGAACAGCAGGCAGG 108622 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||| || || | |||||||| | ||| || ||||| || || || | |||| Sbjct 108621 CGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGG 108562 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 ||||| || || ||||| ||||| || || | ||| || | ||| ||||| |||| Sbjct 108561 GCATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCACTGAAGAAGATAC 108502 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| |||| || || || || | ||| | || | || | | |||| | |||| Sbjct 108501 CCTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGGTAGACTTCTTGTCAGCGATCC 108442 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 ||| | |||| || || || | ||||| || || || ||||| || || | Sbjct 108441 ATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGA 108382 Query 17208 -ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 || |||| | | | || | || || ||||| ||||| || |||| | ||| Sbjct 108381 GATGGGTCTTCTGGGCGG-GCTCCTTGATGTAGGTATCAATGAGAAGAGAGTACGTCTCG 108323 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||||| ||||||||||| ||||| || ||||| |||||||| || || | || ||| Sbjct 108322 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGA 108263 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 ||||| || |||||| || | || || ||||| |||||||||||| ||||||||| Sbjct 108262 ACTTCACCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAG 108203 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTA-AGAACGCGCCAGTCC 17443 || || | || || | |||| | || ||||| || | | | | |||||| Sbjct 108202 AAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCGGTTACTCCAGTCA 108143 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 | | ||| ||||| | ||| | || |||| ||||| || |||| | ||| || Sbjct 108142 TGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGTGCTTCTTG 108083 Query 17504 TACATATTCCAAAT 17517 ||||| | ||| || Sbjct 108082 TACATCTGCCAGAT 108069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539784081320