Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq21 199 5e-46 seq3 114 2e-20 >seq21 Length=436828 Score = 199 bits (220), Expect = 5e-46 Identities = 589/899 (66%), Gaps = 12/899 (1%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||||||||| || | |||| | | ||||| || || | || |||||||| | | Sbjct 6448 TCAAACTCGTCGCCGTAGACATCAGCTAGGCCAGGGCACTCGTTGGGGCACATCAAAGTC 6389 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 ||||| |||| | || || || ||||| || || || |||||||| ||||| | || Sbjct 6388 CACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAGAGAGCCAAGAAA 6329 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 ||||| | || | |||||| || || ||||| ||| ||||||||| | | Sbjct 6328 AGATCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCGAAG 6269 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||| || ||||| || || | ||| |||| | | ||||| | ||||| || ||| Sbjct 6268 ACATCCGAGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGTCTCTTGTTGCCACCC 6209 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | ||||||||| |||||||| | || | | ||| || | ||| || || || Sbjct 6208 TGGTCAACGTATCTAGCAGTGTTATTGAAGACACGAAGCATGGGTACAATTCCGTTCGAG 6149 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 54310 | ||| ||||| || | |||||| || | ||||| ||| || ||||| Sbjct 6148 GTACCGTTGGTTCCAGCGATATAAGAGCCGGTAGCACGGATACGGTGGATGTTGAGACCA 6089 Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370 || || || ||||| || ||||| | || || || | ||||| ||||| || || Sbjct 6088 ATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCGTAGATACCGTCA 6029 Query 54371 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTC 54428 || || |||||| |||| | | || || ||| ||||| | || | | | |||| Sbjct 6028 ATGCTGTCATCCTTCATATCGACGAGGAAGCAGGAAGACAACTGTGCTTGTGGC--GTTC 5971 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | || ||||| | || || ||||| || || || | || | || | | ||||| | Sbjct 5970 CGGCGTTAAAGAGAGTGGGGGAAGCATGGGTGAAGTACTTGTTCGACATCAAGTTGTAGG 5911 Query 54489 TCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 | | ||| | || | ||| || | || || || || |||||||| | |||| Sbjct 5910 TTTGAATAACCTTCTCAACATCGTCACCCCAG-ATACCGACGGCAACACGCATGATCATG 5852 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 ||||| ||||| || || ||||| | | | || |||||||| ||| ||||| || Sbjct 5851 TGCTGCGGTCTCTCTACAATCTTCTCATCAAGCTTGAGCAAGTAAGATCGCTCCAAGGTC 5792 Query 54608 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 || |||||||| || | ||| ||||| || | || || | ||| | |||| | | Sbjct 5791 TTGAAACCAAAGTATTGGTAGTTGAAA--TCCCTGTCATAGACAATGGCAGAGTCAAAGT 5734 Query 54666 TATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTC 54724 ||||| | | | || ||| | | || ||| || || || ||||| ||| Sbjct 5733 CTTCCTTGTGTCGCATGAC-ACACTCGTATGTATCCTTCGATATCATAGGAGATGCCTTC 5675 Query 54725 CCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttttttt 54784 | || ||||| |||||||||| ||| || | || || | || | || || Sbjct 5674 CTGTTCTTAGGGTTGACATAGTGGTATAGGTCGCTGATAACAGAAGACCATTGCTTCTTG 5615 Query 54785 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 || | |||||||| || || ||||| || | || ||||| |||||||| || || || Sbjct 5614 GTCTGCTTGTGTAGGTTGGACACGGCGATACGTGCTGCTAGGATGGCATAGTCTGGGTG 5556 >seq3 Length=1020397 Score = 114 bits (126), Expect = 2e-20 Identities = 368/567 (65%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || || ||||| || ||| ||||||||||| | | || | |||||||| Sbjct 108634 AACAGCAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 108575 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || |||||||| || |||||||| || | ||| || || || ||||| | ||| Sbjct 108574 AAGGTAAGACCGGGCATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCA 108515 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACCGGC 24301 ||||| || || || || || || |||||||| |||| | || || | | Sbjct 108514 CTGAAGAAGATACCCTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGGTAGACTTC 108455 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 ||||| ||||| | ||||||| || ||||| | || || || || || Sbjct 108454 -TTGTCAGCGATCCATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTC 108396 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || || ||||||| | | || | || || | || |||||||| | ||| Sbjct 108395 AATGGCGTTGAAGAGATGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAG 108336 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| | || || || ||||| || || || || || |||||||| |||| ||| Sbjct 108335 AGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGC 108276 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||||| ||||| ||||| | ||||| || | | || || || || || ||||| Sbjct 108275 CTCGGGGATCTGAACTTCACCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 108216 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT--GTTAG 24598 || || || || || | | || | ||| | || ||||| | || | | Sbjct 108215 GGACGCGGCGAAGAAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCG 108156 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 ||| |||| |||| | ||| || || | ||| | || || | ||||| || || || Sbjct 108155 GTTACTCCAGTCATGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGC 108096 Query 24659 CTCTGCCTTTTTATACATATTCCAGAT 24685 ||| ||| || ||||| | |||||| Sbjct 108095 CTCGTGCTTCTTGTACATCTGCCAGAT 108069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714928053520