Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq47 105 8e-18 >seq47 Length=246405 Score = 105 bits (116), Expect = 8e-18 Identities = 205/299 (69%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 145869 CACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 |||||||||||| ||| | | ||| ||||| || || |||| || || || Sbjct 133341 CACGTAGAACTGCGCAAAC-ATGTGACAGGGAGGAAGCACCATCTTCTTCATATCTCGCG 133399 Query 145928 GGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTA 145984 ||||||| |||| |||| | | | || ||| |||||| |||||| || || Sbjct 133400 GGTTCCACGCGGACAGGATTA---TGCGGCGGTCGTACGGGTTCGTCTTGAGCTTGTGTA 133456 Query 145985 TCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACG 146044 | | || ||| ||||| ||||| || || ||||| || |||| ||| |||||| Sbjct 133457 TGACTTCGGCGAGTTGGTCGACGCCTTGACCAGTATAATCGGTTTTGGCGTCGACGTACT 133516 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 |||| ||||| || | ||| ||||| |||||||| || || ||||| ||| ||| | || Sbjct 133517 CGGCACCGAAATGGCGCCATTGGAAACCGTAGACAGGGCCTAGGTCACCGACCTCTCGGT 133576 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 || ||| | ||||||| || || || || ||| ||||||||||||| ||| Sbjct 133577 CTGTGAGTCCGAGGTTGTCGAGGAACTCGCGCGAACCATTGCCGTCCCAGATCTTCACG 133635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590070169011960