Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq83 87.8 2e-12 >seq1 Length=1159409 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| ||||| || ||| || ||||||||||||| || ||| Sbjct 849630 GTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCC 849689 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||||| ||| ||||| || | || |||||||| |||||| || Sbjct 849690 GCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTTA 849749 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | |||| || | ||| || ||||| ||||| | || Sbjct 849750 ACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTC 849809 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 849810 TTGACGAAGATTTGCAT 849826 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| || ||||| |||||||| ||||| | |||||| || ||||||| || || ||||| Sbjct 849857 AGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTGCTTGCC 849916 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || | || || | ||| ||||| ||| | |||||||||||| |||||| || Sbjct 849917 GGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGACTT 849976 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| || || | ||| || | |||||||||||| ||||| | || Sbjct 849977 GACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGGGT 850036 Query 21158 TTTGACAAATATTT 21171 ||||| | | ||| Sbjct 850037 CTTGACGACTGTTT 850050 >seq83 Length=135873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | |||||||||||| || ||||| ||||| | Sbjct 25715 CCACCACGGAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 25656 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || ||||||| || || ||||| || | || || | ||| |||||| ||| Sbjct 25655 AGCGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 25596 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || || | |||| Sbjct 25595 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 25536 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| ||||||||||| || Sbjct 25535 TCGAGGGTGATGGTCTTGCCCGT 25513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422254573490684