Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 280 2e-70 seq39 138 1e-27 seq83 129 6e-25 seq1 123 3e-23 >seq3 Length=1020397 Score = 280 bits (310), Expect = 2e-70 Identities = 509/741 (69%), Gaps = 13/741 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| |||||| || |||||||| | ||||||| | || || Sbjct 108069 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 108128 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| |||||| | || |||||||| ||||| |||| || Sbjct 108129 TCCAAGGATCTTCATGACTGGAGTAACCGATTGAACGATGACGAGAAGTTTTTCGTCTCC 108188 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| |||||||| ||||||||||||||||||||| || |||||||| Sbjct 108189 CACATCCTTGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCTTGTCGAGCGA 108248 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 108249 TTCAGCGGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 108308 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | ||| || ||||| || || ||| | | || | | Sbjct 108309 GAGAACATCCACTCCGAGACGTACTCTCTTCTCATTGATACCTACATCAAGGAGCCCGCC 108368 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 ||||| || | | || |||||||| || || || || ||| || ||||| Sbjct 108369 C----AGAAGACCCATCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGC 108424 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || | |||||||| | || || | |||| | |||| || | || Sbjct 108425 TGACTGGGCTCTCCAATGGATCGCTGACAAGAAGTCTACCTTTGCTCAGCGACTCATTGC 108484 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| ||||| ||||| ||||||| || || ||| | || || ||| | || Sbjct 108485 CTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCTATCTTCTGGTTGAA 108544 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || || |||||||| || || ||| ||||||||||||||| | |||||||| Sbjct 108545 GAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 108604 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || ||||| ||||| |||||||| || || | | || || || || Sbjct 108605 TCTCCACACTGACTTCGCCTGCCTGCTGTTCTCTCACCTGAAGAACCGCCCAGGCAAGGA 108664 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | | | | ||||| ||||||| || || | ||| ||| || ||| | || || || Sbjct 108665 CCTCATTGAGAAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCTTGACTGAGGC 108724 Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 |||| |||| || || || | || | | | |||| ||| ||||||||||||| Sbjct 108725 TTTGCC-CTGCGCCCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTCG 108783 Query 117348 TCGCCGACAGGCTGCTGCTCG 117368 |||| ||| | ||| || ||| Sbjct 108784 TCGCTGACCGTCTGTTGGTCG 108804 >seq39 Length=338136 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 215091 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 215032 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||||||| | |||||| Sbjct 215031 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 214972 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| ||||| || || | || |||||| |||||||||| Sbjct 214971 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 214912 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| || || || || Sbjct 214911 ATCCAGAAGGAGAGCACCCTCCACCTCGT 214883 >seq83 Length=135873 Score = 129 bits (142), Expect = 6e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| || || | |||||| | | Sbjct 25498 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATC 25557 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || |||| ||||| ||||| || ||| ||||||| || || || Sbjct 25558 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAACAGCGTCTG 25617 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| || || || |||| || || ||| |||||||||||||||||| Sbjct 25618 ATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACGCTCTCTGACTACAACATCCAGAAG 25677 Query 40879 GAGGCCACGCTGCATCTAGTG 40899 ||| |||| || || || ||| Sbjct 25678 GAGTCCACTCTCCACCTGGTG 25698 >seq1 Length=1159409 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || |||||| |||| || || | | Sbjct 849826 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACGATCACCCTCGAGGTGGAGTCGTCG 849767 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 849766 GACACCATCGACAACGTT-AAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCA 849708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| ||||| || |||||||| |||| || || |||| ||||||||| Sbjct 849707 ACAGCGACTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGAACTCTCAGCGACTACAA 849648 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 849647 CATTCAGAAGGAGTCTACCCTCCACCTTGT 849618 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| || ||||| | || || ||| | | Sbjct 849598 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACGATCACATTGGAAGTTGAATCTTCG 849539 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || || | ||||| ||||| ||||| | || || Sbjct 849538 GATACGATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 849480 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || || |||| || | |||||||| | ||||||||| Sbjct 849479 GCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGTCGCACCCTGAGCGACTACAA 849420 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||||||| || Sbjct 849419 CATCCAGAAGGAGTCCACGCTCCA 849396 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40694 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA 40753 ||| | |||| || || ||||| || || ||||| ||| |||| ||||| | |||||| Sbjct 850050 AAACAGTCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACA 849991 Query 40754 GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAAC 40813 | | | ||||| ||| |||| ||||| || ||||| ||| | ||||| || | Sbjct 849990 CAATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAACAGC 849931 Query 40814 GACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 40873 | || |||| ||| ||||| || || || |||| || ||||| |||||||||||| | Sbjct 849930 GTCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTATCCGACTACAACATTC 849871 Query 40874 AGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| | || || || || || Sbjct 849870 AGAAGGAATCTACTCTCCACCTTGT 849846 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| || Sbjct 850346 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCC 850287 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | ||||| || |||| ||||| ||||| ||||| | ||| Sbjct 850286 TCCGACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGAC 850227 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || ||| | || | ||| || || ||||| || || | ||||| || || ||| Sbjct 850226 CAACAGCGATTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCGGATTAC 850167 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| |||||| ||| || || || || Sbjct 850166 AACATCCAAAAGGAGAGCACCCTCCACCTTGT 850135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213410224240