Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq39 96.9 3e-15 seq83 93.3 4e-14 >seq1 Length=1159409 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || ||||||||||| ||||| | ||| || ||||| ||||| Sbjct 849623 GTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTG 849682 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || ||||| || || || || || |||||||||||| || || Sbjct 849683 CTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTT 849742 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | |||| |||||||| ||| ||||||| ||| | ||| || ||||| Sbjct 849743 CGACTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGT 849802 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 849803 GAGGGTCTTGACGAAGATTTGCAT 849826 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||||||| ||||| |||||| Sbjct 849390 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCC 849449 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || |||||| |||| ||||| |||||||| || || || ||||||||||| Sbjct 849450 AATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 849509 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| || || || | || | ||| ||| Sbjct 849510 ATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTCTTG 849569 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 849570 CCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| ||||| ||||||||||| || |||||| |||||| ||||| || |||||| | Sbjct 850152 CTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 850211 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 || | ||||| || |||||||| || ||||||||||| ||| || || || | Sbjct 850212 AATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATT 850271 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | ||||| | | ||||||||| | || | || ||||| || ||||| || || Sbjct 850272 GTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 850331 Query 118727 AAAAATCTGCAT 118738 || |||||||| Sbjct 850332 GAAGATCTGCAT 850343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| || || ||||||||||| ||| | || || ||||| || || Sbjct 849851 GTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTG 849910 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| |||||||| || ||||| || ||||| |||||||| ||| || Sbjct 849911 CTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTT 849970 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || || | |||| ||||| | ||||||||||| ||| | || || ||||| Sbjct 849971 TGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGT 850030 Query 118715 CAGAGTTTTTAC 118726 || || || || Sbjct 850031 GAGGGTCTTGAC 850042 >seq39 Length=338136 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| | || || |||||||||||| || || ||| | Sbjct 214900 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAA 214959 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| | |||||||| ||||| || |||||||||||||| ||| || || || | Sbjct 214960 GATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 215019 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||| | ||| ||||| | ||| | || ||||| || || || || || Sbjct 215020 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 215079 Query 118727 AAAAATCTGCATG 118739 || ||||||||| Sbjct 215080 GAAGATCTGCATG 215092 >seq83 Length=135873 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | || || ||||| Sbjct 25698 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCCTC 25639 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || || || ||| |||| |||||||| || || || || || ||||||||||| Sbjct 25638 GAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTG 25579 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | ||| ||||||| ||| | || || Sbjct 25578 AATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 25519 Query 118709 GCCGGTCAGAGTTTTTACAAA 118729 ||| ||||| || || || || Sbjct 25518 GCCCGTCAGGGTCTTCACGAA 25498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825646710108