Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq39 111 2e-19 >seq1 Length=1159409 Score = 125 bits (138), Expect = 8e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 |||||||||||||| || |||||||| | |||||| || | || || |||||||||||| Sbjct 850147 GTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCA 850206 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || | |||||| ||||||| || | | |||||||||| ||| | || | || Sbjct 850207 GCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTGGACTT 850265 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | |||||| || || || || | |||||||| ||||| || || || Sbjct 850266 GACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 850325 Query 43166 CTTTACAAAGATTTGCATTTT 43186 ||| || ||||| ||||| || Sbjct 850326 CTTGACGAAGATCTGCATCTT 850346 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || ||||| || |||| || ||||||||||| || || Sbjct 849635 CTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAA 849694 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||| ||||| | ||| | | |||||||| | || | || | | | ||| Sbjct 849695 GATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGT-CTTGGATCTTCGACTTAACGT 849753 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| ||||| |||| ||||| || || || || || ||||| | Sbjct 849754 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGA 849813 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 849814 CGAAGATTTGCAT 849826 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| ||||| || | | ||| | ||||| || | ||| |||||| || || |||| Sbjct 849364 CCTACTGTCCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGT 849423 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || ||| || || | || || | |||||||||||||| || || || ||||| | Sbjct 849424 AGTCGCTCAGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGAT 849483 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | || | | |||||||||| ||| || |||| ||| | | | ||| || Sbjct 849484 CAGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATCGTATCCGAA 849542 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || | ||||| || |||||||| | ||||| || ||||| ||||| Sbjct 849543 GATTCAACTTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 >seq39 Length=338136 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || || | || || |||||||| || Sbjct 214895 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCG 214954 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || | |||||||||||||| || | || |||||||||| ||| | || | || Sbjct 214955 GCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTT 215013 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | |||||| || ||||| || | ||||| || |||||||| || || Sbjct 215014 GACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 215073 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 215074 CTTGACGAAGATCTGCAT 215091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811174199720