Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq39 122 6e-23 seq1 113 3e-20 seq83 102 5e-17 >seq39 Length=338136 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || || ||||| |||||||||||||| Sbjct 214865 CCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 214924 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || | |||||||||||| ||| Sbjct 214925 AGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGG 214984 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| || || || Sbjct 214985 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACC 215044 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 215045 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 215091 >seq1 Length=1159409 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | |||| ||| ||||| |||||||||||||| || ||| |||| Sbjct 849843 AGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCC 849902 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || || ||||| |||||| ||| | || |||||||| Sbjct 849903 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCC 849962 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | |||| ||| ||||| || | || ||||| Sbjct 849963 TGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 850022 Query 34358 TTGCCGGTGAGAGTTTTCAC 34377 || |||||||| || || || Sbjct 850023 TTTCCGGTGAGGGTCTTGAC 850042 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | || || || || || |||||||| || ||||| ||| | || Sbjct 850132 AGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCC 850191 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | ||||| |||||| || | | ||||||||| Sbjct 850192 TCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCC 850251 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || ||||| || | |||||||| Sbjct 850252 TGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 850311 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| |||||||| || || |||||||||||| Sbjct 850312 TTGCCAGTGAGAGTCTTGACGAAGATCTGCATC 850344 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG--GACAGCTGACGGTCGT 34235 || || ||||| | ||| || ||||| |||||||||||| || || | ||| ||| Sbjct 849615 AGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTT--CGGCCGT 849672 Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTG 34294 | |||| |||||| || || || || || ||||| ||||| | |||| | | ||||||| Sbjct 849673 CCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGG-ATACCCTCCTTG 849731 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | | | | || | || | ||| || || || | ||||| Sbjct 849732 TCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATC 849791 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||| || || || ||||| ||||| Sbjct 849792 GTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 849826 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||| ||| || | || ||||| ||||| || ||||| Sbjct 849408 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAG 849467 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || || ||||| || || | | ||||||||| ||||| ||| | | | Sbjct 849468 ATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG 849527 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| ||| | ||||| || |||| ||||| || ||||| || | || || || Sbjct 849528 TCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACG 849587 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 849588 AAGATCTGCAT 849598 >seq83 Length=135873 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||| || ||| ||| |||| Sbjct 25700 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCC 25641 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || || ||||| ||||| ||| | | ||||||||| Sbjct 25640 TCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCC 25581 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || || || || | |||||||| Sbjct 25580 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 25521 Query 34358 TTGCCGGTGAGAGTTTTCACAAAG 34381 ||||| || || || ||||| ||| Sbjct 25520 TTGCCCGTCAGGGTCTTCACGAAG 25497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068460241440